From 1aa769198666becd30648eed7f9037e9d0502ce9 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 16 May 2017 14:54:17 +0100
Subject: [PATCH] JAL-2418 JAL-2316 added to new features

---
 help/helpTOC.xml                    |    3 ++-
 help/html/features/preferences.html |    6 +++++-
 help/html/releases.html             |    4 +++-
 3 files changed, 10 insertions(+), 3 deletions(-)

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 52eaf85..62df81f 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -26,7 +26,8 @@
 				<tocitem text="Latest Release Notes" target="release"/>
 				<tocitem text="Groovy Features Counter example" target="groovy.featurescounter"/>
 				<tocitem text="Omit hidden regions in Overview" target="overview"/>
-				<tocitem text="Split Frame View" target="splitframe.mirrorfonts" />
+				<tocitem text="identifers.org for URL Links" target="linksprefs" />
+				<tocitem text="New features in Split Frame View" target="splitframe.mirrorfonts" />
 		</tocitem>
 		
 		<tocitem text="Editing Alignments" target="edit" />
diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html
index 6e8d3e4..acd7ba6 100755
--- a/help/html/features/preferences.html
+++ b/help/html/features/preferences.html
@@ -261,7 +261,11 @@
     The <em>Custom only</em> button limits the entries in the table to
     just those you have configured yourself <em>via</em> the <em>Edit
       Links</em> buttons. Press <em>Show all</em> to clear any filters.
-  <p>
+  </p>
+  <p>The links table is prepoulated with persistent URLs for many common
+    bioinformatics databases (since 2.10.2). These links are downloaded by Jalview from
+    the <em>identifiers.org</em> website, and the names and URLs are not
+    user editable.
     <a href="../webServices/urllinks.html#urllinks">Read more about configuring
       URL links.</a>
   </p>
diff --git a/help/html/releases.html b/help/html/releases.html
index ecdcb84..9018910 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -81,7 +81,9 @@ li:before {
           </ul>
           <em>Application</em>
           <ul>
-          <li></li>
+          <li><!--  --></li>
+  
+          <li><!-- JAL-2316, -->URLs for viewing database cross-references provided by identifiers.org and the EMBL-EBI's MIRIAM DB</li>
           </ul>
           <em>Applet</em>
           <ul>
-- 
1.7.10.2