From 1b9c3c2c4051fa3e39091ed9b5203c44482cd80e Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 8 Sep 2016 14:35:58 +0100
Subject: [PATCH] JAL-2089 JAL-2119 help link fixups

---
 help/helpTOC.xml                               |    2 +-
 help/html/features/uniprotqueryfields.html     |    8 ++++++--
 help/html/features/uniprotsequencefetcher.html |    4 ++--
 help/html/whatsNew.html                        |    5 +++--
 4 files changed, 12 insertions(+), 7 deletions(-)

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index f5b28f7..a6145c1 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -107,7 +107,7 @@
 			<tocitem text="By RNA Helices" target="colours.rnahelices" />
 		</tocitem>
 		
-		<tocitem text="Calculations" target="calculations" expand="false">
+		<tocitem text="Calculations" expand="false">
 			<tocitem text="Sorting alignments" target="sorting" />
 			<tocitem text="Calculating trees" target="trees" />
 			<tocitem text="Principal Component Analysis" target="pca" />
diff --git a/help/html/features/uniprotqueryfields.html b/help/html/features/uniprotqueryfields.html
index 376180a..eaee308 100644
--- a/help/html/features/uniprotqueryfields.html
+++ b/help/html/features/uniprotqueryfields.html
@@ -27,9 +27,13 @@
   <p>
     <strong>UniProtKB query fields</strong>
   </p>
-<p>Supported query fields for searching specific data in UniProtKB (see also <a href="text-search">query syntax</a>).</p>
+  <p>
+    Supported query fields for searching specific data in UniProtKB (see
+    also <a href="uniprotsequencefetcher.html#text-search">query
+      syntax</a>).
+  </p>
 
-<table  border="1" width="95%">
+  <table  border="1" width="95%">
   <tr>
     <th>Field</th>
     <th>Example</th>
diff --git a/help/html/features/uniprotsequencefetcher.html b/help/html/features/uniprotsequencefetcher.html
index 77f7b60..ed7cbb7 100644
--- a/help/html/features/uniprotsequencefetcher.html
+++ b/help/html/features/uniprotsequencefetcher.html
@@ -67,8 +67,8 @@
       mnt_mouse).<br />Hitting Return or OK will automatically fetch
       those IDs, like the default Sequence Fetcher interface.</li>
 
-    <li><strong>Complex queries with the UniProt query
-        Syntax</strong> The text box also allows complex queries to be entered.
+    <li><strong><a name="text-search">Complex queries with the UniProt query
+        Syntax</a></strong> The text box also allows complex queries to be entered.
       The table below provides a brief overview of the supported syntax
       (see <a href="uniprotqueryfields.html">query fields for
         UniProtKB</a>):
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index a74e5b7..407eca3 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -27,8 +27,9 @@
     <strong>What's new ?</strong>
   </p>
   <p>
-    Jalview 2.10 is the next major release in the Jalview 2 series. Full details are in the
-    <a href="releases.html#Jalview.2.10">Jalview 2.10 Release Notes</a>, but the highlights are below.
+    Jalview 2.10 is the next major release in the Jalview 2 series. Full
+    details are in the <a href="releases.html#Jalview.2.10.0">Jalview
+      2.10 Release Notes</a>, but the highlights are below.
   </p>
   <p>
     <strong>Highlights in Jalview 2.10</strong>
-- 
1.7.10.2