From 1cd51de3fa6a6949947a5faf9f579e57f165ecf1 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Sun, 13 Aug 2017 15:34:20 +0100
Subject: [PATCH] JAL-2663 source formatting

---
 src/jalview/ws/jws2/AbstractJabaCalcWorker.java |    8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/src/jalview/ws/jws2/AbstractJabaCalcWorker.java b/src/jalview/ws/jws2/AbstractJabaCalcWorker.java
index b33df0c..f94d18c 100644
--- a/src/jalview/ws/jws2/AbstractJabaCalcWorker.java
+++ b/src/jalview/ws/jws2/AbstractJabaCalcWorker.java
@@ -113,7 +113,7 @@ public abstract class AbstractJabaCalcWorker extends AlignCalcWorker
 
   public List<Option> getJabaArguments()
   {
-    List<Option> newargs = new ArrayList<Option>();
+    List<Option> newargs = new ArrayList<>();
     if (preset != null && preset instanceof JabaWsParamSet)
     {
       newargs.addAll(((JabaWsParamSet) preset).getjabaArguments());
@@ -450,19 +450,19 @@ public abstract class AbstractJabaCalcWorker extends AlignCalcWorker
       inputSeqs = alignment;
     }
 
-    List<compbio.data.sequence.FastaSequence> seqs = new ArrayList<compbio.data.sequence.FastaSequence>();
+    List<compbio.data.sequence.FastaSequence> seqs = new ArrayList<>();
 
     int minlen = 10;
     int ln = -1;
     if (bySequence)
     {
-      seqNames = new HashMap<String, SequenceI>();
+      seqNames = new HashMap<>();
     }
     gapMap = new boolean[0];
     start = inputSeqs.getStartRes();
     end = inputSeqs.getEndRes();
 
-    for (SequenceI sq : ((List<SequenceI>) inputSeqs.getSequences()))
+    for (SequenceI sq : (inputSeqs.getSequences()))
     {
       if (bySequence ? sq.findPosition(end + 1)
               - sq.findPosition(start + 1) > minlen - 1 : sq.getEnd()
-- 
1.7.10.2