From 1d6ae39a6442c455d362b933f1da89b0a481e5f5 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 8 Jun 2005 16:23:11 +0000
Subject: [PATCH] if missing forward slash

---
 src/jalview/io/BLCFile.java |   19 ++++++++++++++-----
 1 file changed, 14 insertions(+), 5 deletions(-)

diff --git a/src/jalview/io/BLCFile.java b/src/jalview/io/BLCFile.java
index 687eef9..e0750d5 100755
--- a/src/jalview/io/BLCFile.java
+++ b/src/jalview/io/BLCFile.java
@@ -99,11 +99,20 @@ public class BLCFile extends AlignFile {
                             ends.addElement("0");
                         }
                     } else {
-                        ids.addElement(line.substring(abracket + 1,
-                                line.indexOf("/")));
-                        line = line.substring(line.indexOf("/") + 1);
-                        starts.addElement(line.substring(0, line.indexOf("-")));
-                        ends.addElement(line.substring(line.indexOf("-") + 1));
+                        if(line.indexOf("/")>-1)
+                        {
+                          ids.addElement(line.substring(abracket + 1,
+                              line.indexOf("/")));
+                          line = line.substring(line.indexOf("/") + 1);
+                          starts.addElement(line.substring(0, line.indexOf("-")));
+                          ends.addElement(line.substring(line.indexOf("-") + 1));
+                        }
+                        else{
+                          ids.addElement(line.substring(abracket+1));
+                          starts.addElement("0");
+                          ends.addElement("0");
+                        }
+
                     }
                 }
             } while (!idsFound);
-- 
1.7.10.2