From 205a4ac63d5d8ffcf5cf8d3556b5aca94f6cce06 Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 28 Sep 2011 16:08:43 +0100
Subject: [PATCH] jnlps with and without file associations for default,1G and
 2G memory.

---
 build.xml |  171 +++++++++++++++++++++++++++++++++++++++++++++++++++----------
 1 file changed, 144 insertions(+), 27 deletions(-)

diff --git a/build.xml b/build.xml
index e9528fc..6cfaf4e 100755
--- a/build.xml
+++ b/build.xml
@@ -88,6 +88,8 @@
 		<!-- Don't change anything below here unless you know what you are doing! -->
 		<!-- Url path for WebStart in JNLP file -->
 		<property name="WebStartLocation" value="http://www.jalview.org/webstart" />
+		<!-- J2SE version needed for webstart launch -->
+		<property name="j2sev" value="1.6+"/>
 		<!-- build directory configuration -->
 		<property name="libDir" value="lib" />
 		<property name="resourceDir" value="resources" />
@@ -234,6 +236,45 @@
 
 		<!--    codebase="http://www.jalview.org/jalview/webstart" -->
 		<!-- href="jalview.jnlp" prevent hard-wired pickup of jnlp in certain javaws versions -->
+		<jnlp toFile="${packageDir}/jalview_noa.jnlp" codebase="${WebStartLocation}">
+			<information>
+				<title>Jalview</title>
+				<vendor>The Barton Group</vendor>
+				<homepage href="http://www.jalview.org" />
+				<description>Jalview Multiple Alignment Editor</description>
+				<description kind="short">Jalview</description>
+				<icon href="logo_big.gif" />
+				<offline_allowed />
+				<!--
+				<association mime-type="application-x/ext-file" extensions="fa"/>
+        <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="fastq"/>
+        <association mime-type="application-x/ext-file" extensions="blc"/>
+        <association mime-type="application-x/ext-file" extensions="msf"/>
+        <association mime-type="application-x/ext-file" extensions="pfam"/>
+        <association mime-type="application-x/ext-file" extensions="aln"/>
+        <association mime-type="application-x/ext-file" extensions="pir"/>
+        <association mime-type="application-x/ext-file" extensions="amsa"/>
+        <association mime-type="application-x/ext-file" extensions="stk"/>-->
+			</information>
+			<resources>
+				<j2se version="${j2sev}" initial_heap_size="10M"  />
+				<fileset dir="${packageDir}">
+					<include name="jalview.jar" />
+				</fileset>
+				<fileset dir="${packageDir}">
+					<include name="*.jar" />
+					<include name="*_*.jar" />
+					<exclude name="jalview.jar" />
+				</fileset>
+				<property name="jalview.version" value="${JALVIEW_VERSION}" />
+			</resources>
+			<application_desc main_class="jalview.bin.Jalview">
+			</application_desc>
+			<security>
+				<all_permissions />
+			</security>
+		</jnlp>
 		<jnlp toFile="${packageDir}/jalview.jnlp" codebase="${WebStartLocation}">
 			<information>
 				<title>Jalview</title>
@@ -243,8 +284,47 @@
 				<description kind="short">Jalview</description>
 				<icon href="logo_big.gif" />
 				<offline_allowed />
+				<association mime-type="application-x/ext-file" extensions="fa"/>
+        <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="fastq"/>
+        <association mime-type="application-x/ext-file" extensions="blc"/>
+        <association mime-type="application-x/ext-file" extensions="msf"/>
+        <association mime-type="application-x/ext-file" extensions="pfam"/>
+        <association mime-type="application-x/ext-file" extensions="aln"/>
+        <association mime-type="application-x/ext-file" extensions="pir"/>
+        <association mime-type="application-x/ext-file" extensions="amsa"/>
+        <association mime-type="application-x/ext-file" extensions="stk"/>
+			</information>
+			<resources>
+				<j2se version="${j2sev}" initial_heap_size="10M"/>
+				<fileset dir="${packageDir}">
+					<include name="jalview.jar" />
+				</fileset>
+				<fileset dir="${packageDir}">
+					<include name="*.jar" />
+					<include name="*_*.jar" />
+					<exclude name="jalview.jar" />
+				</fileset>
+				<property name="jalview.version" value="${JALVIEW_VERSION}" />
+			</resources>
+			<application_desc main_class="jalview.bin.Jalview">
+			</application_desc>
+			<security>
+				<all_permissions />
+			</security>
+		</jnlp>
+		
+		<jnlp toFile="${packageDir}/jalview_noa_1G.jnlp" codebase="${WebStartLocation}">
+			<information>
+				<title>Jalview</title>
+				<vendor>The Barton Group</vendor>
+				<homepage href="http://www.jalview.org" />
+				<description>Jalview Multiple Alignment Editor</description>
+				<description kind="short">Jalview</description>
+				<icon href="logo_big.gif" />
+				<offline_allowed />
 				<!--
-	<association mime-type="application-x/ext-file" extensions="fa"/>
+				<association mime-type="application-x/ext-file" extensions="fa"/>
         <association mime-type="application-x/ext-file" extensions="fasta"/>
         <association mime-type="application-x/ext-file" extensions="fastq"/>
         <association mime-type="application-x/ext-file" extensions="blc"/>
@@ -253,10 +333,10 @@
         <association mime-type="application-x/ext-file" extensions="aln"/>
         <association mime-type="application-x/ext-file" extensions="pir"/>
         <association mime-type="application-x/ext-file" extensions="amsa"/>
-	-->
+        <association mime-type="application-x/ext-file" extensions="stk"/>-->
 			</information>
 			<resources>
-				<j2se version="1.5+" initial_heap_size="10M" />
+				<j2se version="${j2sev}" initial_heap_size="128M" max_heap_size="512M" />
 				<fileset dir="${packageDir}">
 					<include name="jalview.jar" />
 				</fileset>
@@ -273,7 +353,6 @@
 				<all_permissions />
 			</security>
 		</jnlp>
-		<!-- the rest of these jnlp tasks are copy and pastes of the above but with different Vm args -->
 		<jnlp toFile="${packageDir}/jalview_1G.jnlp" codebase="${WebStartLocation}">
 			<information>
 				<title>Jalview</title>
@@ -283,20 +362,19 @@
 				<description kind="short">Jalview</description>
 				<icon href="logo_big.gif" />
 				<offline_allowed />
-				<!--
-		<association mime-type="application-x/ext-file" extensions="fa"/>
-	        <association mime-type="application-x/ext-file" extensions="fasta"/>
-	        <association mime-type="application-x/ext-file" extensions="fastq"/>
-	        <association mime-type="application-x/ext-file" extensions="blc"/>
-	        <association mime-type="application-x/ext-file" extensions="msf"/>
-	        <association mime-type="application-x/ext-file" extensions="pfam"/>
-	        <association mime-type="application-x/ext-file" extensions="aln"/>
-	        <association mime-type="application-x/ext-file" extensions="pir"/>
-	        <association mime-type="application-x/ext-file" extensions="amsa"/>
-		-->
+				<association mime-type="application-x/ext-file" extensions="fa"/>
+        <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="fastq"/>
+        <association mime-type="application-x/ext-file" extensions="blc"/>
+        <association mime-type="application-x/ext-file" extensions="msf"/>
+        <association mime-type="application-x/ext-file" extensions="pfam"/>
+        <association mime-type="application-x/ext-file" extensions="aln"/>
+        <association mime-type="application-x/ext-file" extensions="pir"/>
+        <association mime-type="application-x/ext-file" extensions="amsa"/>
+        <association mime-type="application-x/ext-file" extensions="stk"/>
 			</information>
 			<resources>
-				<j2se version="1.5+" initial_heap_size="64M" max_heap_size="512M" />
+				<j2se version="${j2sev}" initial_heap_size="128M" max_heap_size="512M" />
 				<fileset dir="${packageDir}">
 					<include name="jalview.jar" />
 				</fileset>
@@ -313,7 +391,7 @@
 				<all_permissions />
 			</security>
 		</jnlp>
-		<jnlp toFile="${packageDir}/jalview_2G.jnlp" codebase="${WebStartLocation}">
+		<jnlp toFile="${packageDir}/jalview_noac_2G.jnlp" codebase="${WebStartLocation}">
 			<information>
 				<title>Jalview</title>
 				<vendor>The Barton Group</vendor>
@@ -323,19 +401,58 @@
 				<icon href="logo_big.gif" />
 				<offline_allowed />
 				<!--
-			<association mime-type="application-x/ext-file" extensions="fa"/>
-		        <association mime-type="application-x/ext-file" extensions="fasta"/>
-		        <association mime-type="application-x/ext-file" extensions="fastq"/>
-		        <association mime-type="application-x/ext-file" extensions="blc"/>
-		        <association mime-type="application-x/ext-file" extensions="msf"/>
-		        <association mime-type="application-x/ext-file" extensions="pfam"/>
-		        <association mime-type="application-x/ext-file" extensions="aln"/>
-		        <association mime-type="application-x/ext-file" extensions="pir"/>
-		        <association mime-type="application-x/ext-file" extensions="amsa"/>
+				<association mime-type="application-x/ext-file" extensions="fa"/>
+        <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="fastq"/>
+        <association mime-type="application-x/ext-file" extensions="blc"/>
+        <association mime-type="application-x/ext-file" extensions="msf"/>
+        <association mime-type="application-x/ext-file" extensions="pfam"/>
+        <association mime-type="application-x/ext-file" extensions="aln"/>
+        <association mime-type="application-x/ext-file" extensions="pir"/>
+        <association mime-type="application-x/ext-file" extensions="amsa"/>
+        <association mime-type="application-x/ext-file" extensions="stk"/>
 			-->
 			</information>
 			<resources>
-				<j2se version="1.5+" initial_heap_size="256M" max_heap_size="1024M" />
+				<j2se version="${j2sev}" initial_heap_size="256M" max_heap_size="1024M" />
+				<fileset dir="${packageDir}">
+					<include name="jalview.jar" />
+				</fileset>
+				<fileset dir="${packageDir}">
+					<include name="*.jar" />
+					<include name="*_*.jar" />
+					<exclude name="jalview.jar" />
+				</fileset>
+				<property name="jalview.version" value="${JALVIEW_VERSION}" />
+			</resources>
+			<application_desc main_class="jalview.bin.Jalview">
+			</application_desc>
+			<security>
+				<all_permissions />
+			</security>
+		</jnlp>
+		<jnlp toFile="${packageDir}/jalview_2G.jnlp" codebase="${WebStartLocation}">
+			<information>
+				<title>Jalview</title>
+				<vendor>The Barton Group</vendor>
+				<homepage href="http://www.jalview.org" />
+				<description>Jalview Multiple Alignment Editor</description>
+				<description kind="short">Jalview</description>
+				<icon href="logo_big.gif" />
+				<offline_allowed />
+				<association mime-type="application-x/ext-file" extensions="fa"/>
+        <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="fastq"/>
+        <association mime-type="application-x/ext-file" extensions="blc"/>
+        <association mime-type="application-x/ext-file" extensions="msf"/>
+        <association mime-type="application-x/ext-file" extensions="pfam"/>
+        <association mime-type="application-x/ext-file" extensions="aln"/>
+        <association mime-type="application-x/ext-file" extensions="pir"/>
+        <association mime-type="application-x/ext-file" extensions="amsa"/>
+        <association mime-type="application-x/ext-file" extensions="stk"/>
+			</information>
+			<resources>
+				<j2se version="${j2sev}" initial_heap_size="256M" max_heap_size="1024M" />
 				<fileset dir="${packageDir}">
 					<include name="jalview.jar" />
 				</fileset>
-- 
1.7.10.2