From 211aaaa35b57085ede9c87a1bc330cf93d1032ff Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Wed, 21 Mar 2012 20:11:14 +0000 Subject: [PATCH] in progress --- forester/ruby/evoruby/lib/evo/apps/evo_nursery.rb | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/forester/ruby/evoruby/lib/evo/apps/evo_nursery.rb b/forester/ruby/evoruby/lib/evo/apps/evo_nursery.rb index 2f634d6..fc2303a 100755 --- a/forester/ruby/evoruby/lib/evo/apps/evo_nursery.rb +++ b/forester/ruby/evoruby/lib/evo/apps/evo_nursery.rb @@ -26,10 +26,10 @@ module Evoruby class EvoNursery GAP_RATIO = 0.75 GAP_RATIO_FOR_SEQS = 0.75 - MIN_LENGTH = 40 + MIN_LENGTH = 30 MIN_SEQS = 4 - MAX_SEQS = 1600 - MAX_ALN_FILE_SIZE = 4000000 + MAX_SEQS = 2000 + MAX_ALN_FILE_SIZE = 5000000 MODEL = :auto RATES = :uniform FASTME_INITIAL_TREE = :GME @@ -40,10 +40,10 @@ module Evoruby FASTME_OUTPUT_D = FastMe::OUTPUT_D PRG_NAME = "evo_nursery" - PRG_DATE = "2009.10.15" + PRG_DATE = "2012.03.21" PRG_DESC = "pfam alignments to evolutionary trees" PRG_VERSION = "0.20" - COPYRIGHT = "2009-2010 Christian M Zmasek" + COPYRIGHT = "2009-2012 Christian M Zmasek" CONTACT = "phylosoft@gmail.com" WWW = "www.phylosoft.org" -- 1.7.10.2