From 21b2c08c209b0c4eb1111dab1d81e8408c245ddd Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 19 Jul 2006 10:57:43 +0000
Subject: [PATCH] Count uniprot refs

---
 src/jalview/io/DasSequenceFeatureFetcher.java |    8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/src/jalview/io/DasSequenceFeatureFetcher.java b/src/jalview/io/DasSequenceFeatureFetcher.java
index 20ae27c..b4dd1f6 100755
--- a/src/jalview/io/DasSequenceFeatureFetcher.java
+++ b/src/jalview/io/DasSequenceFeatureFetcher.java
@@ -83,7 +83,8 @@ public class DasSequenceFeatureFetcher implements Runnable
       DasCoordinateSystem[] coords = source.getCoordinateSystem();
       for (int c = 0; c < coords.length; c++)
       {
-        if (coords[c].getName().equalsIgnoreCase("UniProt"))
+        System.out.println(coords[c].getName());
+        if (coords[c].getName().indexOf("UniProt")>-1)
         {
           uniprotCount++;
           break;
@@ -99,9 +100,10 @@ public class DasSequenceFeatureFetcher implements Runnable
       {
         for(int j=0; j<dbref.size(); j++)
         {
-          System.out.println(dbref.elementAt(j)
+          DBRefEntry entry = (DBRefEntry)dbref.elementAt(j);
+          System.out.println(entry.getSource()
                              +" "+jalview.datamodel.DBRefSource.UNIPROT);
-          if(dbref.elementAt(j)
+          if(entry.getSource()
              .equals(jalview.datamodel.DBRefSource.UNIPROT))
           {
             System.out.println("got a match");
-- 
1.7.10.2