From 21f5fdf2abf0eaebeadfb0980eb2201d34defd6c Mon Sep 17 00:00:00 2001 From: gmungoc Date: Sun, 29 May 2016 20:49:25 +0100 Subject: [PATCH] JAL-2119 fixes for broken links in help files --- help/html/features/annotationsFormat.html | 2 +- help/html/features/splitView.html | 4 ++-- help/html/keys.html | 2 +- help/html/menus/popupMenu.html | 5 ++--- help/html/releases.html | 5 +---- help/html/webServices/index.html | 2 +- help/html/webServices/urllinks.html | 2 +- 7 files changed, 9 insertions(+), 13 deletions(-) diff --git a/help/html/features/annotationsFormat.html b/help/html/features/annotationsFormat.html index 545f0c1..744370b 100755 --- a/help/html/features/annotationsFormat.html +++ b/help/html/features/annotationsFormat.html @@ -110,7 +110,7 @@ followed by a description for the row, which is shown in a tooltip when the user mouses over the annotation row's label. Since Jalview 2.7, the description field may also contain HTML tags (in - the same way as a sequence feature's + the same way as a sequence feature's label), providing the text is enclosed in an <html/> tag. diff --git a/help/html/keys.html b/help/html/keys.html index a477457..f129551 100755 --- a/help/html/keys.html +++ b/help/html/keys.html @@ -159,7 +159,7 @@ Both Cuts the (fully) selected sequences from the alignment. +columns are selected, you should use the Hide Regions feature instead.--> diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html index 1eb2366..353fb41 100755 --- a/help/html/menus/popupMenu.html +++ b/help/html/menus/popupMenu.html @@ -144,9 +144,8 @@ and sequence description to be entered. Press OK to accept your edit. To save sequence descriptions, you must save in Fasta, PIR or Jalview File format. -
  • Add - Reference Annotations
    -     When enabled, copies any available alignment +
  • Add Reference Annotations
    + When enabled, copies any available alignment annotation for this sequence to the current view.
  • Set as Reference or Unmark as Reference
    Sets or unsets the reference sequence for diff --git a/help/html/releases.html b/help/html/releases.html index 0bb5fb7..d4bbd33 100755 --- a/help/html/releases.html +++ b/help/html/releases.html @@ -1392,10 +1392,7 @@ between different screens.
  • New preference items for sequence ID tooltip and consensus annotation
    • -
  • Client to submit sequences and IDs to Envision2 - Workflows -
    • +
  • Client to submit sequences and IDs to Envision2 Workflows
  • Vamsas Capabilities
    • Improved VAMSAS synchronization (Jalview archive diff --git a/help/html/webServices/index.html b/help/html/webServices/index.html index 04ccd8f..b03bb9d 100755 --- a/help/html/webServices/index.html +++ b/help/html/webServices/index.html @@ -88,7 +88,7 @@ >REST web services exposing sequence alignment, analysis, and secondary structure prediction programs. Originally, Jalview 2's services were maintained by the Barton group at the University of - Dundee, and ran programs on the Life Sciences High-performace + Dundee, and ran programs on the Life Sciences High-performance Computing Cluster. With the advent of JABAWS, however, it is possible for anyone to host Jalview web diff --git a/help/html/webServices/urllinks.html b/help/html/webServices/urllinks.html index de0f8cd..7a23d58 100644 --- a/help/html/webServices/urllinks.html +++ b/help/html/webServices/urllinks.html @@ -83,7 +83,7 @@ Please Note: