From 24083e614ed7907e0e3e2b631d642d6179ff7b20 Mon Sep 17 00:00:00 2001 From: jprocter Date: Tue, 30 Aug 2011 14:18:16 +0100 Subject: [PATCH] fix for JAL-917 - ensure all sequence strings are made uppercase before alignment --- src/jalview/analysis/AlignSeq.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java index 28c6283..9994634 100755 --- a/src/jalview/analysis/AlignSeq.java +++ b/src/jalview/analysis/AlignSeq.java @@ -126,7 +126,7 @@ public class AlignSeq */ public AlignSeq(SequenceI s1, SequenceI s2, String type) { - SeqInit(s1, s1.getSequenceAsString(), s2, s2.getSequenceAsString(), + SeqInit(s1, s1.getSequenceAsString().toUpperCase(), s2, s2.getSequenceAsString().toUpperCase(), type); } -- 1.7.10.2