From 243951bc32e308e5fbd57860336fdb3e39ebd822 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Wed, 7 Jan 2015 17:23:04 +0000
Subject: [PATCH] JAL-845 TODO comment added

---
 src/jalview/datamodel/Alignment.java |    4 ++++
 1 file changed, 4 insertions(+)

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index f31fcd8..91108bc 100755
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -1612,6 +1612,10 @@ public class Alignment implements AlignmentI
     {
       return false;
     }
+
+    // TODO: match sequence ids, allow different sequence ordering?
+    // TODO: allow for stop/start codons?
+    // TODO: exclude introns
     int i = 0;
     for (SequenceI seq : this.getSequences())
     {
-- 
1.7.10.2