From 261d2ca1b0eef309cd9d178e023c6bfecbd62017 Mon Sep 17 00:00:00 2001 From: James Procter Date: Thu, 6 Jul 2023 16:49:23 +0100 Subject: [PATCH] JAL-2292 verify mixed case alignment actually aligns --- test/jalview/analysis/TestAlignSeq.java | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/test/jalview/analysis/TestAlignSeq.java b/test/jalview/analysis/TestAlignSeq.java index 62250eb..44bea81 100644 --- a/test/jalview/analysis/TestAlignSeq.java +++ b/test/jalview/analysis/TestAlignSeq.java @@ -121,7 +121,9 @@ public class TestAlignSeq assertEquals(as.getAStr1(), as.getAStr2().toUpperCase(Locale.ROOT)); Mapping s1tos2 = as.getMappingFromS1(false); - checkMapping(s1tos2,s1,ns2); + assertEquals("ASdFA",as.getAStr2()); + // verify mapping is consistent between original all-caps sequences + checkMapping(s1tos2,s1,s2); } @Test(groups = { "Functional" }) -- 1.7.10.2