From 27156beed73b8e97298a62ffe67691b6b683ec68 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 14 Jun 2006 10:15:39 +0000
Subject: [PATCH] parseAppletParam

---
 src/jalview/appletgui/AlignViewport.java |   30 +++++++++++++++++++++++++-----
 1 file changed, 25 insertions(+), 5 deletions(-)

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 152966e..cd6515e 100755
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -141,14 +141,34 @@ public class AlignViewport
     updateConservation();
     updateConsensus();
 
-    if (applet != null && applet.getParameter("defaultColour") != null)
+
+    if (applet != null)
     {
-      globalColourScheme = ColourSchemeProperty.getColour(alignment,
-          applet.getParameter("defaultColour"));
-      if (globalColourScheme != null)
+      String colour = applet.getParameter("defaultColour");
+
+      if(colour == null)
+      {
+        colour = applet.getParameter("userDefinedColour");
+        if(colour !=null)
+          colour = "User Defined";
+      }
+
+      if(colour != null)
+      {
+        globalColourScheme = ColourSchemeProperty.getColour(alignment, colour);
+        if (globalColourScheme != null)
+        {
+          globalColourScheme.setConsensus(vconsensus);
+        }
+      }
+
+      if(applet.getParameter("userDefinedColour")!=null)
       {
-        globalColourScheme.setConsensus(vconsensus);
+        ((UserColourScheme)globalColourScheme).parseAppletParameter(
+            applet.getParameter("userDefinedColour"));
       }
+
+
     }
   }
 
-- 
1.7.10.2