From 279ba0fea22587564af5250cfd69e679fa5515bc Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 18 Mar 2005 16:09:12 +0000
Subject: [PATCH] align suffix updated

---
 src/jalview/io/JalviewFileView.java |   18 +++++++++++++++---
 1 file changed, 15 insertions(+), 3 deletions(-)

diff --git a/src/jalview/io/JalviewFileView.java b/src/jalview/io/JalviewFileView.java
index aa9d6f2..cdf873a 100755
--- a/src/jalview/io/JalviewFileView.java
+++ b/src/jalview/io/JalviewFileView.java
@@ -3,9 +3,21 @@ package jalview.io;
 import javax.swing.filechooser.FileView;
 import javax.swing.*;
 import java.io.*;
+import java.util.*;
 
 public class JalviewFileView extends FileView
 {
+  static Hashtable alignSuffix = new Hashtable();
+  static{
+    alignSuffix.put("fasta", "Fasta file");
+    alignSuffix.put("fa", "Fasta file");
+    alignSuffix.put("fastq", "Fasta file");
+    alignSuffix.put("blc", "BLC file");
+    alignSuffix.put("msf", "MSF file");
+    alignSuffix.put("pfam", "PFAM file");
+    alignSuffix.put("aln", "Clustal file");
+    alignSuffix.put("pir", "PIR file");
+  }
   public String getTypeDescription(File f)
   {
     String extension = getExtension(f);
@@ -13,9 +25,9 @@ public class JalviewFileView extends FileView
 
     if (extension != null)
     {
-      if (extension.equals("fasta") || extension.equals("fa") || extension.equals("fastq"))
+      if (alignSuffix.containsKey(extension))
       {
-        type = "Fasta file";
+        type = alignSuffix.get(extension).toString();
       }
     }
     return type;
@@ -28,7 +40,7 @@ public class JalviewFileView extends FileView
 
     if (extension != null)
     {
-      if (extension.equals("fasta") || extension.equals("fa") || extension.equals("fastq"))
+      if (alignSuffix.containsKey(extension))
       {
         icon = createImageIcon("/images/file.png");
       }
-- 
1.7.10.2