From 27b78e7d308dd52df87135dd815740ad1a64b1ab Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 4 Apr 2006 09:31:35 +0000
Subject: [PATCH] Cursor colour

---
 src/jalview/gui/SequenceRenderer.java |    8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index ab6c1ab..ec93abf 100755
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -224,7 +224,13 @@ public class SequenceRenderer
 
         if(monospacedFont && av.showText && allGroups.length==0 && !av.getColourText())
         {
+          if(av.renderGaps)
           graphics.drawString(seq.getSequence(start, end + 1), 0, y1);
+         else
+         {
+           char gap = av.getGapCharacter();
+           graphics.drawString( seq.getSequence(start, end+1).replace(gap, ' '), 0, y1);
+         }
         }
         else
         {
@@ -352,7 +358,7 @@ public class SequenceRenderer
     {
       int pady = av.charHeight / 5;
       int charOffset = 0;
-      graphics.setColor(Color.lightGray);
+      graphics.setColor(Color.black);
       graphics.fillRect(x1, y1, av.charWidth, av.charHeight);
       graphics.setColor(Color.white);
 
-- 
1.7.10.2