From 2863477bc61bf5a8aa04279ed8be27fd2b66ca9f Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 22 May 2012 12:33:19 +0100
Subject: [PATCH] JAL-1065,JAL-1066 propagated notification of colourscheme
 when alignment changed to refactored code
 (SHA:677878508a8006cbf7e94e4d4e129ddcf3e3f2c2)

---
 src/jalview/viewmodel/AlignmentViewport.java |    2 ++
 1 file changed, 2 insertions(+)

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index 703e9a7..ae1a4fd 100644
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -1058,6 +1058,8 @@ public abstract class AlignmentViewport implements AlignViewportI
     ColourSchemeI cs = globalColourScheme;
     if (cs != null)
     {
+      cs.alignmentChanged(alignment);
+      // TODO: fold all recalc events for clustalX into alignmentChanged
       if (cs instanceof ClustalxColourScheme)
       {
         ((ClustalxColourScheme) cs).resetClustalX(alignment.getSequences(),
-- 
1.7.10.2