From 29d19adde0492c91383568aef5bc269cb113616e Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 11 Apr 2007 13:01:44 +0000
Subject: [PATCH] Adjustment for hidden columns

---
 src/jalview/gui/ScalePanel.java |    9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/src/jalview/gui/ScalePanel.java b/src/jalview/gui/ScalePanel.java
index 36b414f..f71ff3a 100755
--- a/src/jalview/gui/ScalePanel.java
+++ b/src/jalview/gui/ScalePanel.java
@@ -277,15 +277,18 @@ public class ScalePanel
         sg.setStartRes(res);
       }
 
+      int col;
       for (int i = min; i <= max; i++)
       {
-        if ( (i < sg.getStartRes()) || (i > sg.getEndRes()))
+        col = av.getColumnSelection().adjustForHiddenColumns(i);
+
+        if ( (col < sg.getStartRes()) || (col > sg.getEndRes()))
         {
-          av.getColumnSelection().removeElement(i);
+          av.getColumnSelection().removeElement(col);
         }
         else
         {
-          av.getColumnSelection().addElement(i);
+          av.getColumnSelection().addElement(col);
         }
       }
 
-- 
1.7.10.2