From 2a63b447bec39d34eea1b1bbd7504761ca603a8e Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Sat, 28 Sep 2013 03:40:50 +0000 Subject: [PATCH] inprogress --- .../ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb b/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb index 5d03737..e9d0bf0 100644 --- a/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb +++ b/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb @@ -388,8 +388,10 @@ module Evoruby from = 1 end to = to + ADD_TO_CLOSE_PAIRS - if to > in_msa.get_length - to = in_msa.get_length + temp_seqs = in_msa.find_by_name_start( seq_name, true ) + temp_seq = in_msa.get_sequence( temp_seqs[ 0 ] ) + if to > temp_seq.get_length + to = temp_seq.get_length end end -- 1.7.10.2