From 2a6d70ec8fa41acdfed93b5a25f68dc3ca6e2375 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Fri, 11 Jun 2010 15:06:15 +0000
Subject: [PATCH] stockholm added as readable format (Lauren Lui commit)

---
 help/html/releases.html                 |    1 +
 src/jalview/io/AppletFormatAdapter.java |    4 ++--
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/help/html/releases.html b/help/html/releases.html
index 3dd6fda..802910a 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -51,6 +51,7 @@
 			of columns are hidden</li>
 			<li>annotation label popup menu not providing correct
 			add/hide/show options when rows are hidden or none are present</li>
+			<li>Stockholm format shown in list of readable formats.</li>
 		</ul>
 		<em>Applet</em>
 		<ul>
diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java
index 9f148be..5301ab6 100755
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -65,7 +65,7 @@ public class AppletFormatAdapter
    * corresponding to READABLE_FNAMES
    */
   public static final String[] READABLE_EXTENSIONS = new String[]
-  { "fa, fasta, fastq", "aln", "pfam", "msf", "pir", "blc", "amsa", "jar" }; // ,
+  { "fa, fasta, fastq", "aln", "pfam", "msf", "pir", "blc", "amsa", "jar", "sto" }; // ,
                                                                              // ".blast"
                                                                              // };
 
@@ -74,7 +74,7 @@ public class AppletFormatAdapter
    * READABLE_EXTENSIONS
    */
   public static final String[] READABLE_FNAMES = new String[]
-  { "Fasta", "Clustal", "PFAM", "MSF", "PIR", "BLC", "AMSA", "Jalview" };// ,
+  { "Fasta", "Clustal", "PFAM", "MSF", "PIR", "BLC", "AMSA", "Jalview", "Stockholm" };// ,
                                                                          // "SimpleBLAST"
                                                                          // };
 
-- 
1.7.10.2