From 2c5026c454594e7299a58b57fe0df3aa563c8d8b Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 16 Jan 2020 14:38:45 +0000
Subject: [PATCH] JAL-3474 release notes

---
 help/help/html/releases.html |  100 +++++++++++++++++++++++-------------------
 1 file changed, 54 insertions(+), 46 deletions(-)

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index a8ca218..0f4dd9b 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -58,7 +58,7 @@ li:before {
     <tr>
       <td width="60" align="center" nowrap>
           <strong><a name="Jalview.2.11.1">2.11.1</a><br />
-            <em>16/1/2020</em></strong>
+            <em>16/2/2020</em></strong>
       </td>
       <td align="left" valign="top">
         <ul>
@@ -76,6 +76,14 @@ li:before {
             <!-- JAL-2987 -->OSX - Can't view results in PDB/Uniprot FTS
           </li>
         </ul>
+        
+        <em>Repository and Source Release</em>
+        <ul>
+          <li>
+            <!-- JAL-3474 -->removed redundant .gitignore files from
+            repository
+          </li>
+        </ul>
       </td>
     </tr>
     <tr>
@@ -509,51 +517,51 @@ li:before {
 				<li>
 				<!-- JAL-3340 -->Select columns containing feature by double clicking ignores bounds of an existing selected region
 				</li>
-					<li>
-						<!-- JAL-3313 -->Codon consensus logo incorrectly scaled in gapped
-						regions of protein alignment.
-					</li>
-					<li>
-						<!-- JAL-2647 -->Input Data menu entry is greyed out when PCA View
-						is restored from a Jalview 2.11 project
-					</li>
-					<li>
-						<!-- JAL-3213 -->Alignment panel height can be too small after
-						'New View'
-					</li>
-					<li>
-						<!-- JAL-3240 -->Display is incorrect after removing gapped
-						columns within hidden columns
-					</li>
-					<li>
-						<!-- JAL-3314 -->Rightmost selection is lost when mouse re-enters
-						window after dragging left to select columns to left of visible
-						region
-					</li>
-					<li>
-						<!-- JAL-2876 -->Features coloured according to their description
-						string and thresholded by score in earlier versions of Jalview are
-						not shown as thresholded features in 2.11. To workaround please
-						create a Score filter instead.
-					</li>
-					<li>
-					<!-- JAL-3184 -->Cancel on Feature Settings dialog doesn't reset group visibility</li> 
-					<li>
-					<!-- JAL-3338 -->F2 doesn't enable/disable keyboard mode in linked CDS/Protein view
-					</li>
-          <li>
-            <!-- JAL-797 -->Closing tree windows with CMD/CTRL-W for
-            alignments with multiple views can close views unexpectedly
-          </li>
-          </ul>
-          <em>Java 11 Specific defects</em>
-            <ul>
-              <li>
-                <!-- JAL-3235 -->Jalview Properties file is not sorted
-                alphabetically when saved
-              </li>
-          </ul>
-			</td>
+				<li>
+					<!-- JAL-3313 -->Codon consensus logo incorrectly scaled in gapped
+					regions of protein alignment.
+				</li>
+				<li>
+					<!-- JAL-2647 -->Input Data menu entry is greyed out when PCA View
+					is restored from a Jalview 2.11 project
+				</li>
+				<li>
+					<!-- JAL-3213 -->Alignment panel height can be too small after
+					'New View'
+				</li>
+				<li>
+					<!-- JAL-3240 -->Display is incorrect after removing gapped
+					columns within hidden columns
+				</li>
+				<li>
+					<!-- JAL-3314 -->Rightmost selection is lost when mouse re-enters
+					window after dragging left to select columns to left of visible
+					region
+				</li>
+				<li>
+					<!-- JAL-2876 -->Features coloured according to their description
+					string and thresholded by score in earlier versions of Jalview are
+					not shown as thresholded features in 2.11. To workaround please
+					create a Score filter instead.
+				</li>
+				<li>
+				<!-- JAL-3184 -->Cancel on Feature Settings dialog doesn't reset group visibility</li> 
+				<li>
+				<!-- JAL-3338 -->F2 doesn't enable/disable keyboard mode in linked CDS/Protein view
+				</li>
+        <li>
+          <!-- JAL-797 -->Closing tree windows with CMD/CTRL-W for
+          alignments with multiple views can close views unexpectedly
+        </li>
+        </ul>
+        <em>Java 11 Specific defects</em>
+          <ul>
+            <li>
+              <!-- JAL-3235 -->Jalview Properties file is not sorted
+              alphabetically when saved
+            </li>
+        </ul>
+      </td>
 		</tr>
     <tr>
     <td width="60" nowrap>
-- 
1.7.10.2