From 2ca2207a05be706b6b068839e9f752d8c0744315 Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Sun, 2 Sep 2012 14:32:27 +0100
Subject: [PATCH] JAL-659 cope with case insensitive accessions by forcing to
 uppercase

---
 src/jalview/ws/DasSequenceFeatureFetcher.java |    4 ++++
 1 file changed, 4 insertions(+)

diff --git a/src/jalview/ws/DasSequenceFeatureFetcher.java b/src/jalview/ws/DasSequenceFeatureFetcher.java
index bef6425..6a31956 100644
--- a/src/jalview/ws/DasSequenceFeatureFetcher.java
+++ b/src/jalview/ws/DasSequenceFeatureFetcher.java
@@ -449,6 +449,10 @@ public class DasSequenceFeatureFetcher
         for (SEGMENT seg : segments)
         {
           String id = seg.getId();
+          if (ids.indexOf(id)==-1)
+          {
+            id=id.toUpperCase();
+          }
           DBRefEntry dbref = idobj.get(ids.indexOf(id));
           SequenceI sequence = sequencemap.get(id);
           boolean added = false;
-- 
1.7.10.2