From 2ff689ff801298ecd96dd9b4eddf1c443ef30fa8 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 26 Mar 2007 17:25:41 +0000
Subject: [PATCH] Add seq mapping for multiple seq 2 pdbs

---
 src/jalview/gui/Jalview2XML.java |    7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 3c8d31a..ba2364a 100755
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -1828,10 +1828,13 @@ public class Jalview2XML
                             new java.awt.Rectangle(x, y, width, height));
 
               }
-              else
+              else if(comp!=null)
               {
                 StructureSelectionManager.getStructureSelectionManager()
-                    .setMapping(seq, pdbFile, jalview.io.AppletFormatAdapter.FILE);
+                    .setMapping(seq, pdbFile,
+                                jalview.io.AppletFormatAdapter.FILE);
+
+                ( (AppJMol) comp).addSequence(seq);
               }
             }
           }
-- 
1.7.10.2