From 30578786c1cddee4911a62ec3fbd4fbb292e8ec0 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Sun, 27 Apr 2014 18:38:13 +0100 Subject: [PATCH] JAL-1164 (regression) reinstate 'apply disorder prediction to selection' functionality in 2.8.1+ lost during JabaCalcWorker refactoring --- src/jalview/ws/jws2/JabawsCalcWorker.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/jalview/ws/jws2/JabawsCalcWorker.java b/src/jalview/ws/jws2/JabawsCalcWorker.java index 8515dbc..f585732 100644 --- a/src/jalview/ws/jws2/JabawsCalcWorker.java +++ b/src/jalview/ws/jws2/JabawsCalcWorker.java @@ -379,7 +379,7 @@ public abstract class JabawsCalcWorker extends AlignCalcWorker end=inputSeqs.getEndRes(); - for (SequenceI sq : ((List) alignment.getSequences())) + for (SequenceI sq : ((List) inputSeqs.getSequences())) { if (bySequence ? sq.findPosition(end+1) -sq.findPosition(start+1) > minlen - 1 : sq.getEnd() - sq.getStart() > minlen - 1) { -- 1.7.10.2