From 306825ab43e7e4232a913f304f6d18b532213b83 Mon Sep 17 00:00:00 2001
From: Jim Procter <j.procter@dundee.ac.uk>
Date: Thu, 20 Oct 2022 16:29:03 +0100
Subject: [PATCH] JAL-2349 JAL-3855 adapt renderer for
 AlignmentI.getContactList(..) mapping to sequence
 associated reference frame

---
 src/jalview/renderer/ContactMapRenderer.java |    5 -----
 1 file changed, 5 deletions(-)

diff --git a/src/jalview/renderer/ContactMapRenderer.java b/src/jalview/renderer/ContactMapRenderer.java
index 29ee22e..b302060 100644
--- a/src/jalview/renderer/ContactMapRenderer.java
+++ b/src/jalview/renderer/ContactMapRenderer.java
@@ -67,11 +67,6 @@ public class ContactMapRenderer implements AnnotationRowRendererI
         x++;
         continue;
       }
-      if (_aa.sequenceRef != null)
-      {
-        // get the sequence position for the column
-        column = _aa.sequenceRef.findPosition(column) - 1;
-      }
       ContactListI contacts = viewport.getContactList(_aa, column);
       if (contacts == null)
       {
-- 
1.7.10.2