From 30bc1314d4206cafea412dcd9decdea7e318481f Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Mon, 30 Jun 2008 09:49:44 +0000
Subject: [PATCH] safer retrieval of groovy scripts from URLs

---
 src/jalview/bin/Jalview.java |    7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index faf98db..4f383a0 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -25,6 +25,7 @@ import java.io.IOException;
 import java.io.OutputStreamWriter;
 import java.io.PrintWriter;
 import java.lang.reflect.Constructor;
+import java.net.URL;
 import java.util.*;
 
 import javax.swing.*;
@@ -466,10 +467,10 @@ public class Jalview
         java.lang.reflect.Method setvar = gbindingc.getMethod("setVariable", new Class[] { String.class, Object.class} );
         setvar.invoke(gbinding, new Object[] { "Jalview", jalviewContext});
         Class gsec = cl.loadClass("groovy.util.GroovyScriptEngine");
-        Constructor gseccons = gsec.getConstructor(new Class[] { String[].class });
-        Object gse = gseccons.newInstance(new Object[] { new String[] { sfile.toURL().toString() } });
+        Constructor gseccons = gsec.getConstructor(new Class[] { URL[].class } ); // String[].class });
+        Object gse = gseccons.newInstance(new Object[] { new URL[] { sfile.toURL() } }); // .toString() } });
         java.lang.reflect.Method run = gsec.getMethod("run", new Class[]{ String.class, gbindingc });
-        run.invoke(gse, new Object[] { sfile.toURL().toString(), gbinding });
+        run.invoke(gse, new Object[] { sfile.getName(), gbinding });
         success = true;
     } catch (Exception e)
     {
-- 
1.7.10.2