From 31def7663858b5ed4840fa3c90d374e0cd798867 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 30 Aug 2005 12:46:34 +0000
Subject: [PATCH] Update colours after remove left, cut, paste

---
 src/jalview/appletgui/AlignFrame.java |    6 ++++--
 src/jalview/gui/AlignFrame.java       |    4 ++++
 2 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 38aea52..bed10a1 100755
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -422,6 +422,7 @@ public class AlignFrame
         viewport.alignment.getWidth();
         viewport.updateConservation();
         viewport.updateConsensus();
+        resetAllColourSchemes();
         alignPanel.repaint();
       }
 
@@ -490,6 +491,7 @@ public class AlignFrame
     }
     viewport.updateConservation();
     viewport.updateConsensus();
+    resetAllColourSchemes();
     alignPanel.repaint();
 
   }
@@ -559,7 +561,7 @@ public class AlignFrame
           viewport.alignment.deleteGroup(sg);
         }
       }
-
+      resetAllColourSchemes();
       alignPanel.repaint();
     }
   }
@@ -587,7 +589,7 @@ public class AlignFrame
           viewport.alignment.deleteGroup(sg);
         }
       }
-
+      resetAllColourSchemes();
       alignPanel.repaint();
     }
 
diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index efe8e63..ada2421 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -707,6 +707,7 @@ public class AlignFrame
         viewport.alignment.getWidth();
         viewport.updateConservation();
         viewport.updateConsensus();
+        resetAllColourSchemes();
         alignPanel.repaint();
       }
     }
@@ -800,6 +801,7 @@ public class AlignFrame
 
     viewport.updateConservation();
     viewport.updateConsensus();
+    resetAllColourSchemes();
     alignPanel.repaint();
   }
 
@@ -909,6 +911,7 @@ public class AlignFrame
         }
       }
 
+      resetAllColourSchemes();
       alignPanel.repaint();
     }
   }
@@ -947,6 +950,7 @@ public class AlignFrame
         }
       }
 
+      resetAllColourSchemes();
       alignPanel.repaint();
     }
   }
-- 
1.7.10.2