From 323638ded3c688c54370243a048c50eff1889bf0 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Wed, 15 May 2013 19:04:42 +0000 Subject: [PATCH] inprogress --- forester/data/tol_147.xml |14305 ++++++++++++++++++++++----------------------- 1 file changed, 6999 insertions(+), 7306 deletions(-) diff --git a/forester/data/tol_147.xml b/forester/data/tol_147.xml index b58baac..29a5683 100644 --- a/forester/data/tol_147.xml +++ b/forester/data/tol_147.xml @@ -1,7307 +1,7000 @@ - - - - - cellular organisms - - - Neomura - - - - 2759 - Eukaryota - superkingdom - - - Unikonta - - - 33154 - Opisthokonta - Fungi/Metazoa group - - - - Holozoa - - - Choanoflagellatea & Metazoa - - - 33208 - Metazoa - kingdom - - - Eumetazoa - - - - Bilateria & Cnidaria - - Bilateria - - Deuterostomia - - - - - 7711 - Chordata - phylum - - - Urochordata & Vertebrata - - - 7742 - Vertebrata - - - - 7776 - Gnathostomata - jawed vertebrates - superclass - - - - 117571 - Euteleostomi - - - Tetrapoda - - Amniota - - - 40674 - Mammalia - class - - - Theria - - - 9347 - Eutheria - Placental mammals - - - The new framework for understanding placental mammal evolution - - - - Boreoeutheria - Boreotheria - - - - 314146 - Euarchontoglires - superorder - - - - Euarchonta - - - - 9443 - Primates - order - - - - 376913 - Haplorrhini - suborder - - - - 314293 - Simiiformes - infraorder - - - - 9526 - Catarrhini - - - - 314295 - Hominoidea - Apes - superfamily - - - - 9604 - Hominidae - Great apes - family - - - - 207598 - Homininae - subfamily - - - - Hominini - tribe - - - - 9606 - HUMAN - Homo sapiens - Human - species - http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg - - - - - 9598 - PANTR - Pan troglodytes - Chimpanzee - species - http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg - - - - - - 9595 - GORGO - Gorilla gorilla gorilla - Western lowland gorilla - subspecies - http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg - - - - - - 9601 - PONAB - Pongo abelii - Sumatran orangutan - Pongo pygmaeus abelii - species - http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg - - - - - - 61853 - NOMLE - Nomascus leucogenys - Northern white-cheeked gibbon - Hylobates leucogenys - Hylobates concolor leucogenys - species - http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png - http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg - - - - - - 9528 - Cercopithecinae - subfamily - - - - 9544 - MACMU - Macaca mulatta - Rhesus macaque - species - http://www.our-pets.net/images/rhesus1.jpg - - - - - 9557 - PAPHA - Papio hamadryas - Hamadryas baboon - species - http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg - - - - - - - 9483 - CALJA - Callithrix jacchus - White-tufted-ear marmoset - Callithrix jacchus jacchus - species - http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg - - - - - - 9478 - TARSY - Tarsius syrichta - Philippine tarsier - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg - - - - - - 376911 - Strepsirrhini - suborder - - - - 30608 - MICMU - Microcebus murinus - Lesser mouse lemur - species - http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg - - - - - 30611 - OTOGA - Otolemur garnettii - Garnett's greater bushbaby - Galago garnetti - Small-eared galago - Garnett's greater bushbaby - species - http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg - - - - - - - 37347 - TUPBE - Tupaia belangeri - Common tree shrew - Tupaia glis belangeri - species - http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG - - - - - - 314147 - Glires - Rodents and rabbits - - - - 9989 - Rodentia - order - - - Ctenohystrica & Mouse-related clade - - Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades. - - - - Mouse-related clade - - - - 337687 - Muroidea - - - - 39107 - Murinae - subfamily - - - - 10090 - MOUSE - Mus musculus - Mouse - species - http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg - - - - - 10116 - RAT - Rattus norvegicus - Rat - species - http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg - - - - - - 10036 - MESAU - Mesocricetus auratus - Golden hamster - species - http://www.dicts.info/img/ud/syrian_hamster.jpg - - - - - - 10020 - DIPOR - Dipodomys ordii - Ord's kangaroo rat - species - http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg - - - - - - 10141 - CAVPO - Cavia porcellus - Guinea pig - species - http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg - - - - - - 43179 - SPETR - Spermophilus tridecemlineatus - Thirteen-lined ground squirrel - Ictidomys tridecemlineatus - species - http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg - - - - - - 9975 - Lagomorpha - Rabbits, hares, pikas - order - - - - 9978 - OCHPR - Ochotona princeps - Southern American pika - species - http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg - - - - - 9986 - RABIT - Oryctolagus cuniculus - Rabbit - species - http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg - - - - - - - - 314145 - Laurasiatheria - superorder - - - - Scrotifera - - - Perissodactyla & Cetartiodactyla & Chiroptera - - Perissodactyla & Cetartiodactyla - - - 91561 - Cetartiodactyla - Even-toed ungulates - - - Cetruminantia & Suina - - - Cetruminantia - - - - 9895 - Bovidae - family - - - - 9913 - BOVIN - Bos taurus - Bovine - Bos bovis - species - http://www.biopix.eu/photos/jcs-bos-taurus-(dansk-rodbroget-kvaeg)-22141.jpg - - - - - 9940 - SHEEP - Ovis aries - Sheep - species - http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg - - - - - - 9721 - Cetacea - Whales - order - - - - 9771 - BALMU - Balaenoptera musculus - Blue whale - species - http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg - - - - - 9739 - TURTR - Tursiops truncatus - Atlantic bottle-nosed dolphin - Delphinus truncatus - species - http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg - - - - - - - 9823 - PIG - Sus scrofa - Pig - species - http://www.batraciens-reptiles.com/sus%20scrofa2.jpg - - - - - - 30538 - LAMPA - Lama guanicoe pacos - Alpaca - Lama pacos - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg - - - - - - 9796 - HORSE - Equus caballus - Horse - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg - - - - - - 9397 - Chiroptera - Bats - order - - - - 59463 - MYOLU - Myotis lucifugus - Little brown bat - species - http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg - - - - - 132908 - PTEVA - Pteropus vampyrus - Large flying fox - species - http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg - - - - - - Carnivora - - 33554 - Carnivora - order - - - - 379584 - Caniformia - suborder - - - - 9646 - AILME - Ailuropoda melanoleuca - Giant panda - species - http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg - - - - CANFA - - 9615 - CANFA - Canis familiaris - Dog - Canis lupus familiaris - subspecies - http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG - - - - - FELCA - - 9685 - FELCA - Felis catus - Cat - Felis silvestris catus - species - http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg - - - - - - - 9362 - Insectivora - hedgehogs, shrews, moles and others - order - - - - 9365 - ERIEU - Erinaceus europaeus - Western European hedgehog - species - http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg - - - - - 42254 - SORAR - Sorex araneus - Eurasian common shrew - European shrew - species - http://www.batraciens-reptiles.com/musaraigne2.jpg - - - - - - - - Atlantogenata - - - - 311790 - Afrotheria - superorder - - - - Paenungulata - - - - 9785 - LOXAF - Loxodonta africana - African savanna elephant - species - http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg - - - - - 9813 - PROCA - Procavia capensis - Cape hyrax - Rock dassie - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg - - - - - - 9371 - ECHTE - Echinops telfairi - Lesser hedgehog tenrec - species - http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg - - - - - - 9348 - Xenarthra - Edentata - superorder - - - - 9358 - CHOHO - Choloepus hoffmanni - Hoffmann's two-fingered sloth - species - http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg - - - - - 9361 - DASNO - Dasypus novemcinctus - Nine-banded armadillo - species - http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg - - - - - - - - 9263 - Metatheria - Marsupials - - - First combined cladistic analysis of marsupial mammal interrelationships - - - - - - Eometatheria - - - - 9315 - MACEU - Macropus eugenii - Tammar wallaby - species - http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg - - - - - 9305 - SARHA - Sarcophilus harrisii - Tasmanian devil - Sarcophilus laniarius - species - http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg - - - - - MONDO - - 13616 - MONDO - Monodelphis domestica - Short-tailed gray opossum - species - http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg - - - - - - ORNAN - - 9258 - ORNAN - Ornithorhynchus anatinus - Duckbill platypus - species - http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png - - - - - - 8457 - Sauropsida - - - Archosauria & Testudines - - The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan - - - - - - - - 8492 - Archosauria - - - Neognathae - - 8825 - Neognathae - superorder - - - Phasianidae & Anatidae (waterfowl) - - - 9005 - Phasianidae - family - - - CHICK - - 9031 - CHICK - Gallus gallus - Chicken - Gallus domesticus - species - http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg - - - - - 9103 - MELGA - Meleagris gallopavo - Common turkey - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg - - - - - - 8839 - ANAPL - Anas platyrhynchos - Domestic duck - Anas boschas - species - http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg - - - - - - 59729 - TAEGU - Taeniopygia guttata - Zebra finch - Poephila guttata - species - http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg - - - - - - 8496 - ALLMI - Alligator mississippiensis - American alligator - species - http://upload.wikimedia.org/wikipedia/commons/c/cd/Two_american_alligators.jpg - - - - - - 13735 - PELSI - Pelodiscus sinensis - (Wiegmann, 1835) Cox et al. 1998 - Chinese softshell turtle - Trionyx sinensis - species - http://www.chelonia.org/PsinensisTR1.jpg - - - - - - 28377 - ANOCA - Anolis carolinensis - Voigt, 1832 - Green anole - American chameleon - species - http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg - http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg - http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Anolis_carolinensis.jpg/800px-Anolis_carolinensis.jpg - - - - - - - 8353 - Xenopus - genus - - - - 8355 - XENLA - Xenopus laevis - Daudin, 1802 - African clawed frog - Bufo laevis - species - http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg - - - - - 8364 - XENTR - Xenopus tropicalis - Western clawed frog - Silurana tropicalis - species - http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg - - - - - - Teleostei - - 32443 - Teleostei - - - - 123368 - Acanthomorpha - - - - 32485 - Percomorpha - - - - 129949 - Smegmamorpha - - - - 32456 - Atherinomorpha - - - ORYLA - - 8090 - ORYLA - Oryzias latipes - Medaka fish - Japanese ricefish - species - http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg - - - - - 8083 - XIPMA - Xiphophorus maculatus - Guenther, 1866 - Southern platyfish - Platypoecilus maculatus - species - http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg - - - - - GASAC - - 69293 - GASAC - Gasterosteus aculeatus - Three-spined stickleback - species - http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg - - - - - - 31031 - Tetraodontidae - puffers - family - - - - 31033 - TAKRU - Takifugu rubripes - Japanese pufferfish - Fugu rubripes - species - http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg - - - - TETNG - - 99883 - TETNG - Tetraodon nigroviridis - Green puffer - Chelonodon nigroviridis - species - http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg - - - - - - 8128 - ORENI - Tilapia nilotica - Linnaeus, 1758 - Nile tilapia - Tilapia nilotica - species - http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg - - - - - - 8049 - GADMO - Gadus morhua - Atlantic cod - species - http://www.marinbi.com/g-morhua.jpg - - - - - DANRE - - 7955 - DANRE - Danio rerio - Zebrafish - Brachydanio rerio - species - http://fishbase.org.cn/images/species/Darer_m0.jpg - - - - - - - 7868 - CALMI - Callorhynchus milii - Australian ghost shark - Australian ghost shark - species - http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg - - - - - - 7757 - PETMA - Petromyzon marinus - Sea lamprey - species - http://www.uk-fish.info/pics/sealampray01.jpg - - - - - Urochordata - - 7712 - Urochordata - subphylum - - - - 7718 - Ciona - genus - - - CIOIN - - 7719 - CIOIN - Ciona intestinalis - Transparent sea squirt - Ascidia intestinalis - species - http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg - - - - CIOSA - - 51511 - CIOSA - Ciona savignyi - Pacific transparent sea squirt - species - http://www.pnwscuba.com/invasives/photos/ciona4.jpg - - - - - OIKDI - - 34765 - OIKDI - Oikopleura dioica - Tunicate - species - http://jellieszone.com/images/oikopleura.jpg - - - - - - BRAFL - - 7739 - BRAFL - Branchiostoma floridae - Florida lancelet - Amphioxus - species - http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg - - - - - Hemichordata & Echinodermata - - SACKO - - 10224 - SACKO - Saccoglossus kowalevskii - Agassiz, 1873 - Acorn worm - species - http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg - - - - STRPU - - 7668 - STRPU - Strongylocentrotus purpuratus - Purple sea urchin - species - http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg - - - - - - Protostomia - - Ecdysozoa - - - 6656 - Arthropoda - phylum - - - - 197563 - Mandibulata - - - Pancrustacea - - - 33340 - Neoptera - subclass - - - - 33392 - Endopterygota - infraclass - - - Hymenoptera & Lepidoptera & Diptera - - Lepidoptera & Diptera - - - 7147 - Diptera - order - - - - 7215 - Drosophila - fruit flies - genus - - - The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research - - - - 32341 - Sophophora - subgenus - - - melanogaster & pseudoobscura subgroups - - - 32346 - melanogaster group - - - - 32351 - melanogaster subgroup - - - DROSE & DROSI & DROME & DROYA - - DROSE & DROSI & DROME - - DROSE & DROSI - - - 7238 - DROSE - Drosophila sechellia - Fruit fly - species - - - - - 7240 - DROSI - Drosophila simulans - Fruit fly - species - - - - - - 7227 - DROME - Drosophila melanogaster - Fruit fly - species - http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg - - - - - - 7245 - DROYA - Drosophila yakuba - Fruit fly - species - - - - - - 7220 - DROER - Drosophila erecta - Fruit fly - species - - - - - - 7217 - DROAN - Drosophila ananassae - Fruit fly - species - - - - - - 32358 - pseudoobscura subgroup - - - - 7234 - DROPE - Drosophila persimilis - Fruit fly - species - - - - - 46245 - DROPS - Drosophila pseudoobscura pseudoobscura - Fruit fly - subspecies - http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg - - - - - - - 7260 - DROWI - Drosophila willistoni - Fruit fly - species - - - - - Drosophila subgenus & Hawaiian Drosophila - - - Drosophila - subgenus - - - - 7230 - DROMO - Drosophila mojavensis - Fruit fly - species - - - - - 7244 - DROVI - Drosophila virilis - Fruit fly - species - - - - - - 7222 - DROGR - Drosophila grimshawi - Fruit fly - Idiomyia grimshawi - species - http://www.pacificislandbooks.com/fruitf~1.jpg - - - - - - - 7157 - Culicidae - mosquitos - family - - - AEDAE - - 7159 - AEDAE - Aedes aegypti - Yellowfever mosquito - Culex aegypti - species - http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg - - - - ANOGA - - 7165 - ANOGA - Anopheles gambiae - African malaria mosquito - species - http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg - - - - CULPI - - 7175 - CULPI - Culex pipiens - House mosquito - species - http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg - - - - - - BOMMO - - 7091 - BOMMO - Bombyx mori - Silk moth - species - http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg - - - - - - 7400 - Apocrita - wasps, ants and bees - - - - 7434 - Aculeata - suborder - - - APIME - - 7460 - APIME - Apis mellifera - Honeybee - species - http://www.floridanature.org/photos/Apis_mellifera_6b_&_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg - - - - - 12957 - ATTCE - Atta cephalotes - Linnaeus, 1758 - Leafcutter ant - species - http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg - - - - - NASVI - - 7425 - NASVI - Nasonia vitripennis - Parasitic wasp - species - http://www.freshpond.org/nasonia.jpg - - - - - - TRICA - - 7070 - TRICA - Tribolium castaneum - Red flour beetle - species - http://www.ars.usda.gov/sp2UserFiles/Place/54300530/proj/tribolium/rfb.jpg - - - - - - 33342 - Paraneoptera - infraclass - - - - 7524 - Hemiptera - order - - - ACYPI - - 7029 - ACYPI - Acyrthosiphon pisum - Pea aphid - species - http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg - - - - RHOPR - - 13249 - RHOPR - Rhodnius prolixus - Triatomid bug - species - http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg - - - - - - 121224 - PEDHC - Pediculus humanus subsp. corporis - Body louse - subspecies - http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg - - - - - - - 6658 - Branchiopoda - class - - - - 6661 - ARTSF - Artemia franciscana - Brine shrimp - Artemia sanfranciscana - species - http://www.alireza-asem.ir/images/Artemia.jpg - - - - DAPPU - - 6669 - DAPPU - Daphnia pulex - Water flea - species - http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg - - - - - - - 61985 - Myriapoda - subphylum - - - - 7553 - Diplopoda - millipedes - class - - - - 118561 - Helminthomorpha - subclass - - - - 364406 - Antrokoreana gracilipes - species - http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg - - - - - 174156 - NARAN - Narceus annularis - Millipede - species - http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg - - - - - - 52428 - Polyxenus lagurus - bristly millipede - species - http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg - - - - - - 7540 - Chilopoda - centipedes - class - - - - 29022 - SCUCO - Scutigera coleoptrata - House centipede - species - http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG - - - - - 126957 - Strigamia maritima - species - http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg - - - - - - - IXOSC - - 6945 - IXOSC - Ixodes scapularis - Black-legged tick - Deer tick - species - http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg - - - - - - 119089 - Chromadorea - class - - - - - nematode Clade V - - - 6237 - Caenorhabditis - genus - - - Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss - - - CAEBR & CAERE & CAEBE & CAEEL - - CAEBR & CAERE & CAEBE - - CAEBR & CAERE - - - 6238 - CAEBR - Caenorhabditis briggsae - species - http://www.life.umd.edu/biology/haag/briggsae_herm.jpg - - - - - 31234 - CAERE - Caenorhabditis remanei - Caenorhabditis vulgaris - species - http://lemur.amu.edu.pl/share/php/mirnest/species_images/Caenorhabditis_remanei.jpg - - - - - - 135651 - CAEBE - Caenorhabditis brenneri - Nematode worm - Caenorhabditis CB5161 - species - - - - - - 6239 - CAEEL - Caenorhabditis elegans - species - http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif - - - - - - 281687 - CAEJA - Caenorhabditis japonica - species - - - - - PRIPA - - 54126 - PRIPA - Pristionchus pacificus - species - http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg - - - - - BRUMA - - 6279 - BRUMA - Brugia malayi - Filarial nematode worm - species - http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG - - - - - - Lophotrochozoa - - Annelida & Mollusca - - - 6447 - Mollusca - phylum - - - - 6448 - Gastropoda - class - - - - 6500 - APLCA - Aplysia californica - California sea hare - species - http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg - - - - - 225164 - LOTGI - Lottia gigantea - Owl limpet - species - http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg - - - - - - 6545 - Pteriomorphia - Pteriomorpha - subclass - - - - 29159 - CRAGI - Crassostrea gigas - Thunberg, 1793 - Pacific oyster - Crassotrea gigas - Crassostrea angulata - Ostrea gigas - species - http://www.marlin.ac.uk/imgs/o_cragig.jpg - - - - - 50426 - PINFU - Pinctada fucata - Pearl oyster - species - http://upload.wikimedia.org/wikipedia/commons/1/1e/Pinctada_margaritifera_MHNT.CON.2002.893.jpg - - - - - - - 6340 - Annelida - phylum - - - - 283909 - CTEXX - Capitella teleta - Blake, Grassle & Eckelbarger, 2009 - Capitella sp. I - species - http://genome.jgi-psf.org/Capca1/capitella.jpg - - - - - 6412 - HELRO - Helobdella robusta - Californian leech - species - http://genome.jgi-psf.org/Helro1/Helro_leech.jpg - - - - - - - 6157 - Platyhelminthes - phylum - - - - 6183 - SCHMA - Schistosoma mansoni - Blood fluke - species - http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg - - - - SCHMD - - 79327 - SCHMD - Schmidtea mediterranea - Freshwater planarian flatworm - species - http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg - - - - - - - - Cnidaria - - 6073 - Cnidaria - phylum - - - - 6102 - Hexacorallia - Ceriantipatharia - Zoantharia - subclass - - - - 70779 - ACRDI - Acropora digitifera - Staghorn coral - species - http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg - - - - - 45351 - NEMVE - Nematostella vectensis - Starlet sea anemone - species - http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg - - - - - - 6085 - HMAXX - Hydra magnipapillata - Ito, 1947 - species - http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif - - - - - - TRIAD - - 10228 - TRIAD - Trichoplax adhaerens - Trichoplax reptans - species - http://ncse.com/files/images/trichoplax_ana_signorovitch.jpg - - - - - - - - 400682 - AMPQE - Amphimedon queenslandica - Hooper & Van Soest, 2006 - Sponge - Reniera sp. JGI-2005 - species - http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg - - - - - 400682 - AMPQE - Amphimedon queenslandica - Hooper & Van Soest, 2006 - Sponge - Reniera sp. JGI-2005 - species - http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg - - - - - - 81524 - Codonosigidae - family - - - MONBE - - 81824 - MONBE - Monosiga brevicollis - Choanoflagellate - species - http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg - - - - - 946362 - SALS5 - Salpingoeca rosetta - Proterospongia sp. ATCC 50818 - Salpingoeca sp. ATCC 50818 - species - http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg - - - - - - Ichthyophonida & Filasterea - - - 198625 - Ichthyophonida - order - - - - 4881 - AMOPA - Amoebidium parasiticum - species - http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg - - - - - 72019 - SARXX - Sphaeroforma arctica - species - http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg - - - - - - Filasterea - - - - - - - - 595528 - CAPO3 - Capsaspora owczarzaki (strain ATCC 30864) - http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg - - - - - 134558 - Ministeria vibrans - species - http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg - - - - - - - - Holomycota - Nucletmycea - - - - 4751 - Fungi - kingdom - - - Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota & Neocallimastigomycota - - Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota - - Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota - - Dikarya & Mucoromycotina & Kickxellomycotina - - Dikarya & Mucoromycotina - - - 451864 - Dikarya - subkingdom - - - - - - - - 4890 - Ascomycota - phylum - - - Pezizomycotina & Saccharomycetales - - - 147538 - Pezizomycotina - Euascomycota - subphylum - - - A five-gene phylogeny of Pezizomycotina - - - - - - 716546 - Leotiomyceta - - - Sordariomyceta & Dothideomycetes & Trichocomaceae & Lecanoromycetes - - Sordariomyceta & Dothideomycetes & Lecanoromycetes - - Sordariomyceta & Lecanoromycetes - - - 715989 - Sordariomyceta - - - - 147550 - Sordariomycetes - class - - - Magnaporthales & Hypocreales - - - 5125 - Hypocreales - order - - - - 398408 - AALXX - Acremonium alcalophilum - species - http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg - - - - GIBZE - - 5518 - GIBZE - Gibberella zeae - Wheat head blight fungus - Fusarium graminearum - species - http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg - - - - - 29875 - HYPVI - Hypocrea virens - Gliocladium virens - Trichoderma virens - Gliocladium flavofuscum - species - http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg - - - - - MAGGR - - 148305 - MAGGR - Magnaporthe grisea - Rice blast fungus - Pyricularia grisea - species - http://www.forestryimages.org/images/768x512/5369002.jpg - - - - - - 5139 - Sordariales - order - - - - 35718 - Chaetomiaceae - family - - - - 35719 - Thielavia - genus - - - - 573729 - THIHA - Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799) - (Apinis) Oorschot 1977 - Sporotrichum thermophilum - Myceliophthora thermophila - species - http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg - - - - - 578455 - THITE - Thielavia terrestris (strain ATCC 38088 / NRRL 8126) - Acremonium alabamense - Thielavia terrestris NRRL 8126 - http://genome.jgi-psf.org/public/Thite2/Thite1.jpg - - - - - CHAGB - - 1029505 - CHAGB - Chaetomium globosum - Kunze 1817 - Soil fungus - species - - - - - NEUCR - - 5141 - NEUCR - Neurospora crassa - species - - - - - - - 147548 - Leotiomycetes - class - - - - 28983 - Sclerotiniaceae - family - - - - 40559 - BOTFU - Botryotinia fuckeliana - Noble rot fungus - Botrytis cinerea - species - - - - - 5180 - SCLSC - Sclerotinia sclerotiorum - White mold - Whetzelinia sclerotiorum - species - - - - - OIDMAI - - 78148 - Oidiodendron maius - species - - - - - - - 388435 - Lecanoromycetidae - subclass - - - CLAGRA - - 27339 - Cladonia grayi - Cladonia grayi Merr - species - http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg - - - - XANPAR - - 107463 - Xanthoria parietina - species - http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg - - - - - - - 147541 - Dothideomycetes - class - - - A class-wide phylogenetic assessment of Dothideomycetes - - - - 134362 - Capnodiales - order - - - - 41254 - Mycosphaerella - genus - - - MYCFI - - 83344 - Mycosphaerella fijiensis - species - - - - MYCGR - - 54734 - MYCGR - Mycosphaerella graminicola - Speckled leaf blotch fungus - Septoria tritici - species - - - - MYCPJ - - 64363 - MYCPJ - Mycosphaerella pini - Red band needle blight disease fungus - Dothistroma septosporum - Dothistroma pini - species - - - - - 692275 - MPSXX - Mycosphaerella populorum SO2202 - Septoria musiva SO2202 - http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg - - - - - - 430998 - BCOXX - Baudoinia compniacensis - species - http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg - - - - - - 715340 - Pleosporineae - suborder - - - - 28556 - Pleosporaceae - family - - - Cochliobolus & Setosphaeria - - - 5015 - Cochliobolus - genus - - - COCHE - - 5016 - COCHE - Cochliobolus heterostrophus - Drechslera maydis - species - - - - - 45130 - COCSA - Cochliobolus sativus - Bipolaris sorokiniana - species - http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg - - - - - - 93612 - SETTU - Setosphaeria turcica - (Luttr.) K.J. Leonard & Suggs, (1974) - Northern corn leaf blight disease fungus - Exserohilum turcicum - Helminthosporium turcicum - species - http://openi.nlm.nih.gov/imgs/rescaled512/3017769_1471-2229-10-103-3.png - - - - - PYRTR - - 426418 - PYRTR - Pyrenophora tritici-repentis (strain Pt-1C-BFP) - Wheat tan spot fungus - Drechslera tritici-repentis - - - - - PHANO - - 13684 - PHANO - Phaeosphaeria nodorum - Glume blotch fungus - Septoria nodorum - species - - - - - - - - 28568 - Trichocomaceae - family - - - - 5052 - Aspergillus - genus - - - - Aspergillus flavus - - - - 5059 - ASPFL - Aspergillus flavus - Link 1809 - Petromyces flavus - species - http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg - - - - - 332952 - ASPFN - Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) - Aspergillus flavus NRRL3357 - - - - - ASPNG - - 5061 - ASPNG - Aspergillus niger - species - - - - - Neosartorya_Emericella - - EMENI - - 195546 - EMENI - Emericella nidulans - Vuill. 1927 - Aspergillus nidulans - species - - - - NEOFI - - 331117 - NEOFI - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) - Aspergillus fischerianus - - - - - - - - 33183 - Onygenales - order - - - COCIM - - 5501 - COCIM - Coccidioides immitis - Valley fever fungus - species - - - - UNCRE - - 336963 - UNCRE - Uncinocarpus reesii (strain UAMH 1704) - - - - - - - 656061 - TUBMM - Tuber melanosporum (strain Mel28) - Perigord black truffle - Tuber melanosporum Mel28 - http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg - - - - - - 4892 - Saccharomycetales - budding yeasts - order - - - Candida & Debaryomyces & Saccharomycetacea - - - 4893 - Saccharomycetaceae - family - - - Saccharomyces_Pichia - - Saccharomyces - - SACCA - - 27288 - SACCA - Saccharomyces castellii - Yeast - Saccharomyces castellii - species - - - - YEAST - - 4932 - YEAST - Saccharomyces cerevisiae - Baker's yeast - species - - - - - PICAN - - 4905 - PICAN - Pichia angusta - Yeast - Hansenula polymorpha - species - - - - - Kluyveromyces & Ashbya - - Kluyveromyces - - KLULA - - 28985 - KLULA - Kluyveromyces lactis - Yeast - Candida sphaerica - species - - - - KLUWA - - 4914 - KLUWA - Kluyveromyces waltii - Yeast - species - - - - - ASHGO - - 33169 - ASHGO - Ashbya gossypii - Yeast - Eremothecium gossypii - species - - - - - - Candida & Debaryomyces - - - 5475 - Candida - genus - - - CANAL - - 5476 - CANAL - Candida albicans - Yeast - species - - - - CANTR - - 5482 - CANTR - Candida tropicalis - Yeast - species - - - - - DEBHA - - 4959 - DEBHA - Debaryomyces hansenii - Yeast - Torulaspora hansenii - species - - - - - - YARLI - - 4952 - YARLI - Yarrowia lipolytica - Candida lipolytica - species - - - - - - - 451866 - Taphrinomycotina - subphylum - - - Pneumocystidomycetes & Schizosaccharomycetes - - - 4895 - Schizosaccharomyces - genus - - - SCHJP - - 4897 - SCHJP - Schizosaccharomyces japonicus - Fission yeast - species - - - - - 4899 - SCHOT - Schizosaccharomyces octosporus - Fission yeast - species - http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG - - - - SCHPO - - 4896 - SCHPO - Schizosaccharomyces pombe - Fission yeast - species - - - - - PNECA - - 4754 - PNECA - Pneumocystis carinii - species - - - - - - 5606 - Saitoella complicata - species - - - - - - - 5204 - Basidiomycota - phylum - - - Agaricomycotina & Ustilaginomycotina & Pucciniomycotina - - Agaricomycotina & Ustilaginomycotina - - - 5302 - Agaricomycotina - - - - 155619 - Homobasidiomycetes - class - - - Evolution of complex fruiting–body morphologies in homobasidiomycetes - - - Agaricomycetidae & Gloeophyllum & Aphyllophorales - - Agaricomycetidae & Gloeophyllum - - - 452333 - Agaricomycetidae - subclass - - - Agaricales & Boletales - - - 5338 - Agaricales - order - - - Agaricus & Coprinopsis & Laccaria & Pleurotus - - Agaricus & Coprinopsis & Laccaria - - Agaricus & Coprinopsis - - - 597362 - AGABU - Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392) - White button mushroom - Agaricus bisporus var. burnettii JB137-S8 - http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg - - - - COPCI - - 5346 - COPCI - Coprinopsis cinerea - Inky cap fungus - Hormographiella aspergillata - species - http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg - - - - - - 29883 - LACBI - Laccaria bicolor - Bicoloured deceiver - Laccaria laccata var. bicolor - species - http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG - - - - - - 206324 - Gymnopus luxurians - species - http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg - - - - - PLEOS - - 5322 - PLEOS - Pleurotus ostreatus - Oyster mushroom - White-rot fungus - species - http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg - - - - - - 68889 - Boletales - Melanogastrales - Sclerodermatales - order - - - - 227334 - Coniophorineae - suborder - - - - 80637 - CPUXX - Coniophora puteana - Schum. ex Fries - cellar fungus - species - http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg - - - - - 578457 - SERL9 - Serpula lacrymans var. lacrymans (strain S7.9) - Dry rot fungus - http://www.anbg.gov.au/fungi/images/0160.jpg - - - - - - 388859 - Hydnomerulius pinastri - Spiny dry rot fungus - species - http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg - - - - - - - 202697 - Jaapia argillacea - species - http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg - - - - - GLOTR - - 104355 - GLOTR - Gloeophyllum trabeum - Brown rot fungus - species - http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg - - - - - - 5303 - Aphyllophorales - Gäum. (1926) - Shelf Fungi - Polyporales - order - - - - 83233 - Coriolaceae - family - - - The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes) - - - - - - - Postia & Fomitopsis & Wolfiporia & Trametes - - Antrodia clade - - Antrodia clade - - - - 40483 - FPIXX - Fomitopsis pinicola - (Swartz) P. Karsten - Red banded polypore - Fomes pinicola - Boletus pinicola - species - http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg - - - - - 104341 - PPLXX - Postia placenta - Rhodonia placenta - species - http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg - - - - - core polyporoid clade - - core polyporoid clade - - - - 5325 - TRAVE - Trametes versicolor - (L.) Lloyd 1921 - White-rot fungus - Coriolus versicolor - Bjerkandera versicolor - species - http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg - http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg - http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg - - - - - 742152 - WOLCO - Wolfiporia cocos (strain MD-104) - Brown rot fungus - Wolfiporia cocos MD-104 SS10 - http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg - - - - - - CERSU - - 42742 - CERSU - Ceriporiopsis subvermispora - species - - - - - - 732165 - DICSQ - Dichomitus squalens (strain LYAD-421) - Western red white-rot fungus - Dichomitus squalens LYAD-421 SS1 - http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg - - - - - - HETAN - - 13563 - HETAN - Heterobasidion annosum - Root rot fungus - species - - - - - - 5215 - Tremellaceae - family - - - CRYNE - - 5207 - CRYNE - Cryptococcus neoformans - Filobasidiella neoformans - species - - - - TREME - - 1029985 - TREME - Tremella mesenterica - Pers. 1800 - Jelly fungus - Yellow Brain - Tremella lutescens - species - - - - - - - 452284 - Ustilaginomycotina - subphylum - - - - 425265 - MALGO - Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) - Dandruff-associated fungus - - - - USTMA - - 5270 - USTMA - Ustilago maydis - Smut fungus - species - - - - - - - 29000 - Pucciniomycotina - subphylum - - - - 5258 - Pucciniales - rusts - order - - - MELLP - - 156696 - MELLP - Melampsora laricis-populina - Kleb. 1902 - Melampsora larici-populina - Melampsora laricipopulina - species - - - - PUCGR - - 1029947 - PUCGR - Puccinia graminis - Pers. 1794 - Black stem rust fungus - Wheat rust - species - - - - - - 89013 - mitosporic Sporidiobolales - - - RHOGR - - 29898 - RHOGR - Rhodotorula graminis - Yeast - species - - - - - 40563 - SPORO - Sporobolomyces roseus - Kluyver & C. B. Niel 1924 - species - - - - - - - WALSE - - 148960 - WALSE - Wallemia sebi - species - - - - - - - 451507 - Mucoromycotina - subphylum - - - - 34489 - Mucoraceae - family - - - MUCCI - - 36080 - MUCCI - Mucor circinelloides - Mucor griseo-roseus - species - - - - PHYBL - - 4837 - PHYBL - Phycomyces blakesleeanus - species - - - - RHIOR - - 64495 - RHIOR - Rhizopus oryzae - Rhizopus delemar - species - - - - - - 1069443 - MVNXX - Mortierella verticillata NRRL 6337 - species - http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg - http://www.diark.org/img/species_pict/Mortierella_verticillata - - - - - - - 61392 - Coemansia reversa - species - - - - - - 28583 - ALLMA - Allomyces macrogynus - species - - - - - - 4761 - Chytridiomycota - chytrids - Mastigomycotina - phylum - - - - 451435 - Chytridiomycetes - class - - - - 109871 - BATDE - Batrachochytrium dendrobatidis - Frog chytrid fungus - species - - - - - 109760 - SPIPN - Spizellomyces punctatus - species - - - - - - 1123529 - GONPR - Gonapodya prolifera - A. Fisch. 1892 - Aquatic fungus - species - http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg - - - - - - - 73868 - PIRSE - Piromyces sp. (strain E2) - species - http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg - - - - - - 6033 - Encephalitozoon - genus - - - - 6035 - ENCCU - Encephalitozoon cuniculi (strain GB-M1) - Microsporidian parasite - species - http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg - - - - - 907965 - ENCHA - Encephalitozoon hellem (strain ATCC 50504) - Microsporidian parasite - http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg - - - - - - Fonticula & Nucleariidae - - - - - 691883 - Fonticula alba - Fonticula alba Worley, Raper & Hohl. 1979 - species - - - - - 154970 - Nuclearia simplex - species - - - - - - - Amoebozoa - - 554915 - Amoebozoa - - - Dictyostelium - - 5782 - Dictyostelium - genus - - - DICDI - - 44689 - DICDI - Dictyostelium discoideum - Slime mold - species - - - - DICPU - - 5786 - DICPU - Dictyostelium purpureum - Slime mold - species - - - - - ENTHI - - 5759 - ENTHI - Entamoeba histolytica - species - - - - - - Bikonta - - - - Plants+HC+SAR megagroup - - Plants+HC - - Archaeplastida - - - 33090 - Viridiplantae - green plants - kingdom - - - - 3193 - Embryophyta - - - - 58023 - Tracheophyta - - - - 3398 - Magnoliophyta - flowering plants - Angiospermae - - - - 71240 - eudicotyledons - - - - 91827 - core eudicotyledons - - - - 71275 - rosids - subclass - - - fabids & malvids - - - 91835 - fabids - - - Rosales & Cucurbitales & Fabales - - Rosales & Cucurbitales - - - 3745 - Rosaceae - family - - - FRAVE - - 57918 - FRAVE - Fragaria vesca - Woodland strawberry - Fragaria vesca L. - European strawberry - alpine strawberry - species - http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg - http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg - - - - PRUPE - - 3760 - PRUPE - Prunus persica - Peach - Persica vulgaris - Amygdalus persica - species - http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg - - - - - CUCSA - - 3659 - CUCSA - Cucumis sativus - Cucumber - species - - - - - - 3814 - Papilionoideae - subfamily - - - SOYBN - - 3847 - SOYBN - Glycine max - cv. Wye - Soybean - Glycine hispida - species - - - - MEDTR - - 3880 - MEDTR - Medicago truncatula - Barrel medic - Medicago tribuloides - species - http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg - - - - - - - 3646 - Malpighiales - order - - - - 3977 - Euphorbiaceae - family - - - MANES - - 3983 - MANES - Manihot esculenta - Tapioca - Jatropha manihot - species - http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg - - - - RICCO - - 3988 - RICCO - Ricinus communis - Castor bean - Ricinus sanguineus - species - http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg - - - - - POPTR - - 3694 - POPTR - Populus trichocarpa - Western balsam poplar - Populus balsamifera subsp. trichocarpa - species - - - - - - - 91836 - malvids - - - Brassicales & Sapindales - - - 3699 - Brassicales - order - - - - 3700 - Brassicaceae - family - - - - 3701 - Arabidopsis - genus - - - ARALY - - 59689 - ARALY - Arabidopsis lyrata - Lyre-leaved rock-cress - species - - - - ARATH - - 3702 - ARATH - Arabidopsis thaliana - Mouse-ear cress - species - - - - - - 98038 - THEHA - Thellungiella halophila - Salt cress - species - http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg - - - - - CARPA - - 3649 - CARPA - Carica papaya - Papaya - species - http://www.biopix.com/photos/jko-carica-papaya-00412.jpg - http://www.texasriviera.com/greenthumbs/papaya10.jpg - - - - - - 2706 - Citrus - genus - - - CITCLE - - 85681 - Citrus clementina - Citrus clementina hort. ex Tanaka - species - http://palmen-bolschetz.de/images/citrus%20clementine.jpg - - - - CITSI - - 2711 - CITSI - Citrus sinensis - Sweet orange - Citrus x sinensis - Citrus aurantium var. sinensis - species - http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg - - - - - - EUCGR - - 71139 - EUCGR - Eucalyptus grandis - Flooded gum - species - http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg - - - - - - VITVI - - 582304 - VITVI - Vitis vinifera - Grape - species - - - - - - 91888 - lamiids - - - - 4070 - Solanaceae - family - - - - 4107 - Solanum - genus - - - - 49274 - Lycopersicon - subgenus - - - - 4081 - SOLLC - Solanum lycopersicum - Tomato - Lycopersicon esculentum - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg - - - - - 4084 - SOLPI - Solanum pimpinellifolium - Currant tomato - Lycopersicon pimpinellifolium - species - http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg - - - - - - 4113 - SOLTU - Solanum tuberosum - Potato - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg - - - - - - 4097 - TOBAC - Nicotiana tabacum - Common tobacco - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg - - - - - MIMGU - - 4155 - MIMGU - Mimulus guttatus - Yellow monkey flower - Yellow monkey flower - species - - - - - - AQUCA - - 218851 - AQUCA - Aquilegia caerulea - E.James - Rocky mountain columbine - Aquilegia coerulea - species - http://content9.eol.org/content/2010/01/01/03/15137_large.jpg - - - - - - 4447 - Liliopsida - monocots - Monocotyledoneae - class - - - - 4479 - Poaceae - grass family - Gramineae - family - - - - 147369 - Panicoideae - Link, 1827 - Centothecoideae - subfamily - - - - 147429 - Andropogoneae - Dumort., 1824 - tribe - - - SORBI - - 4558 - SORBI - Sorghum bicolor - Sorghum - Sorghum vulgare - species - - - - MAIZE - - 4577 - MAIZE - Zea mays - Maize - species - - - - - - 147428 - Paniceae - tribe - - - PANVIR - - 38727 - Panicum virgatum - switchgrass - species - http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg - - - - SETIT - - 4555 - SETIT - Setaria italica - Foxtail millet - Panicum italicum - species - http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg - - - - - - - 359160 - BEP clade - - - - 4527 - Oryza - genus - - - ORYSA - - 4530 - ORYSA - Oryza sativa - Rice - species - - - - ORYSJ - - 39947 - ORYSJ - Oryza sativa subsp. japonica - Rice - - - - - BRADI - - 15368 - BRADI - Brachypodium distachyon - Purple false brome - Trachynia distachya - species - http://content5.eol.org/content/2011/01/15/20/16311_large.jpg - - - - - - - 4641 - MUSAC - Musa acuminata - Banana - Musa cavendishii - species - http://upload.wikimedia.org/wikipedia/commons/f/fd/Musa_acuminata1.jpg - - - - - - SELMO - - 34167 - SELMO - Selaginella mollis - Moss - species - - - - - PHYPA - - 145481 - PHYPA - Physcomitrella patens subsp. patens - Moss - subspecies - - - - - - 3041 - Chlorophyta - phylum - - - - 13792 - Mamiellales - order - - - - 70447 - Ostreococcus - genus - - - OSTLU - - 436017 - OSTLU - Ostreococcus lucimarinus (strain CCE9901) - - - - OSTRC - - 385169 - Ostreococcus sp. RCC809 - species - - - - OSTTA - - 70448 - OSTTA - Ostreococcus tauri - species - - - - - - 38832 - Micromonas - genus - - - MICPC - - 564608 - MICPC - Micromonas pusilla (strain CCMP1545) - Picoplanktonic green alga - - - - MICSR - - 296587 - MICSR - Micromonas sp. (strain RCC299 / NOUM17) - Picoplanktonic green alga - Micromonas sp. RCC299 - species - - - - - - Trebouxiophyceae & Chlorophyceae - - - 75966 - Trebouxiophyceae - class - - - ASTSPC - - 763042 - Asterochloris sp. Cgr/DA1pho - species - http://genome.jgi-psf.org/Astpho1/Figure_3.jpg - - - - CHLSP - - 554065 - Chlorella variabilis - Chlorella sp. NC64A - species - - - - CHLVUL - - 574566 - Coccomyxa sp. C-169 - Chlorella vulgaris C-169 - species - - - - - - 3042 - Chlamydomonadales - order - - - CHLRE - - 3055 - CHLRE - Chlamydomonas reinhardtii - Chlamydomonas smithii - species - - - - - 3067 - VOLCA - Volvox carteri - Green alga - species - http://genome.jgi-psf.org/Volca1/Volvox.jpg - - - - - - - - - 2763 - Rhodophyta - red algae - - - - 265316 - Cyanidiaceae - family - - - - 45157 - CYAME - Cyanidioschyzon merolae - Red alga - species - http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg - - - - - 130081 - GALSU - Galdieria sulphuraria - Red alga - species - http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg - - - - - - 2769 - CHOCR - Chondrus crispus - Carragheen moss - species - http://www.seaweed.ie/_images/MG3_0485.png - - - - - - 38254 - Glaucocystophyceae - Glaucophyta - class - - - - 2762 - CYAPA - Cyanophora paradoxa - species - http://www.people.vcu.edu/~rfisher/paradoxa.jpg - - - - - 38271 - Glaucocystis nostochinearum - species - http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg - - - - - - Hacrobia (Cryptophyta & Haptophyceae & Centroheliozoa) - - - 2903 - EMIHU - Emiliania huxleyi - species - http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg - - - - - 55529 - GUITH - Guillardia theta - Cryptomonas phi - species - http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg - - - Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages - - - - - - - - Stramenopiles & Alveolata & Rhizaria - - Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists - - - - - Stramenopiles & Alveolata - - - 33630 - Alveolata - - - - 5794 - Apicomplexa - phylum - - - - 422676 - Aconoidasida - class - - - - 5820 - Plasmodium - genus - - - PLACH - - 5825 - PLACH - Plasmodium chabaudi - species - - - - PLAFA - - 5833 - PLAFA - Plasmodium falciparum - species - - - - PLAYO - - 73239 - PLAYO - Plasmodium yoelii yoelii - subspecies - - - - - Theileria - - 5873 - Theileria - genus - - - THEAN - - 5874 - THEAN - Theileria annulata - species - - - - THEPA - - 5875 - THEPA - Theileria parva - species - - - - - - - 423054 - Eimeriorina - suborder - - - - 5806 - Cryptosporidium - genus - - - CRYHO - - 237895 - CRYHO - Cryptosporidium hominis - species - - - - CRYPV - - 5807 - CRYPV - Cryptosporidium parvum - species - - - - - Eimeria & Toxoplasma - - The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees - - - - - - 5802 - EIMTE - Eimeria tenella - Coccidian parasite - species - http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg - - - - TOXGO - - 5811 - TOXGO - Toxoplasma gondii - species - - - - - - - - 431838 - Intramacronucleata - subphylum - - - - 6020 - Oligohymenophorea - class - - - PARTE - - 5888 - PARTE - Paramecium tetraurelia - species - - - - TETTH - - 5911 - TETTH - Tetrahymena thermophila - species - - - - - - 1172189 - Oxytricha trifallax - Stein, 1859 - species - http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif - - - - - - - 33634 - Stramenopiles - Patterson 1989, emend. Adl et al. 2005 - Chromophyta - heterokonts - - - Pelagophyceae & Bacillariophyta & Oomycetes - - Seven Gene Phylogeny of Heterokonts - - - - - Pelagophyceae & Bacillariophyta - - - 2836 - Bacillariophyta - diatoms - phylum - - - - 33850 - Bacillariophycidae - - - FRACY - - 186039 - FRACY - Fragilariopsis cylindrus - Krieger - Nitzschia cylindrus - species - http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg - - - - PHATR - - 912693 - PHATR - Phaeodactylum tricornutum - Bohlin - species - - - - - - 35128 - THAPS - Thalassiosira pseudonana - Hasle & Heimdal - Marine diatom - Cyclotella nana - species - http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg - - - - - - 912461 - AURAN - Aureococcus anophagefferens - Hargraves & Sieburth - species - - - - - - 4783 - Phytophthora - genus - - - - 4787 - PHYIN - Phytophthora infestans - (Mont.) de Bary 1876 - Potato late blight fungus - species - http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg - - - - - 164328 - PHYRM - Phytophthora ramorum - Sudden oak death agent - species - - - - - 67593 - PHYSO - Phytophthora sojae - Soybean stem and root rot agent - Phytophthora megasperma f. sp. glycines - species - http://genome.jgi-psf.org/Physo1_1/pramorum.jpg - - - - - - - 33674 - Thraustochytriaceae - Thraustochytriales - family - - - - 702273 - AKEXX - Aplanochytrium kerguelense PBS07 - http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg - - - - - 876976 - SAGXX - Schizochytrium aggregatum ATCC 28209 - http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG - - - - - - - - 543769 - Rhizaria - - - - 71427 - Allogromia laticollaris - species - http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg - - - - - 227086 - BIGNA - Bigelowiella natans - Chlorarachnion sp. (strain CCMP621) - Pedinomonas minutissima - species - http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg - - - - - - - Excavata - - - - Kinetoplastida & Heterolobosea - - - 5654 - Trypanosomatidae - family - - - LEIMA - - 5664 - LEIMA - Leishmania major - species - - - - TRYBB - - 5702 - TRYBB - Trypanosoma brucei brucei - subspecies - - - - - NAEGR - - 5762 - NAEGR - Naegleria gruberi - Amoeba - species - - - - - Metamonada - - GIALA - - 5741 - GIALA - Giardia lamblia - Giardia intestinalis - Giardia lamblia - species - - - - TRIVA - - 5722 - TRIVA - Trichomonas vaginalis - species - - - - - - - 554296 - Apusozoa - - - Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov - - - - 554453 - Planomonas micra - (Cavalier-Smith, 2008) Heiss, Walker & Simpson 2010 - Apusomonadidae sp. micra - species - - - - - 529818 - TTRXX - Thecamonas trahens - Larsen & Patterson 1990 - Amastigomonas trahens - species - http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg - - - - - - - Archaea - - 2157 - Archaea - superkingdom - - - a_62 - - a_56 - - - 28890 - Euryarchaeota - phylum - - - a_44 - - a_28 - - a_26 - - - 224756 - Methanomicrobia - class - - - a_14 - - a_12 - - - 2206 - Methanosarcinaceae - family - - - - 2207 - Methanosarcina - genus - - - a_2 - - METAC - - 2214 - METAC - Methanosarcina acetivorans - species - - - - METBF - - 269797 - METBF - Methanosarcina barkeri (strain Fusaro / DSM 804) - - - - - METMA - - 2209 - METMA - Methanosarcina mazei - Methanosarcina frisia - species - - - - - METBU - - 259564 - METBU - Methanococcoides burtonii (strain DSM 6242) - - - - - a_11 - - 2191 - Methanomicrobiales - order - - - a_9 - - METB6 - - 456442 - METB6 - Methanoregula boonei (strain 6A8) - - - - METHU - - 2203 - METHU - Methanospirillum hungatei - species - - - - - METMJ - - 368407 - METMJ - Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) - - - - - - METLZ - - 410358 - METLZ - Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) - - - - - METTP - - 349307 - METTP - Methanosaeta thermophila (strain DSM 6194 / PT) - Methanothrix thermophila (strain DSM 6194 / PT) - - - - - a_25 - - 2236 - Halobacteriaceae - family - - - a_23 - - a_19 - - HALMA - - 2238 - HALMA - Haloarcula marismortui - Halobacterium marismortui - species - - - - NATPH - - 2257 - NATPH - Natronomonas pharaonis - Natronobacterium pharaonis - species - - - - - a_22 - - 2239 - Halobacterium - genus - - - HALS3 - - 478009 - HALS3 - Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) - - - - HALSP - - 2243 - HALSP - Halobacterium sp. - species - - - - - - HALWD - - 362976 - HALWD - Haloquadratum walsbyi (strain DSM 16790) - - - - - - ARCFU - - 2234 - ARCFU - Archaeoglobus fulgidus - species - - - - - a_43 - - a_41 - - a_35 - - 2182 - Methanococcales - order - - - a_31 - - METJA - - 2190 - METJA - Methanocaldococcus jannaschii - Methanococcus jannaschii - species - - - - META3 - - 419665 - META3 - Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) - - - - - a_34 - - 2184 - Methanococcus - genus - - - METMP - - 39152 - METMP - Methanococcus maripaludis - Methanococcus deltae - species - - - - METVS - - 406327 - METVS - Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) - - - - - - a_40 - - 2159 - Methanobacteriaceae - family - - - a_38 - - METS3 - - 420247 - METS3 - Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) - - - - METST - - 339860 - METST - Methanosphaera stadtmanae (strain DSM 3091) - - - - - METTH - - 187420 - METTH - Methanobacterium thermoautotrophicum - - - - - - METKA - - 2320 - METKA - Methanopyrus kandleri - species - - - - - - a_51 - - 2259 - Thermococcaceae - family - - - a_47 - - PYRFU - - 2261 - PYRFU - Pyrococcus furiosus - species - - - - - 69014 - PYRKO - Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) - Thermococcus kodakaraensis (strain KOD1) - - - - - a_50 - - 2260 - Pyrococcus - genus - - - PYRAB - - 29292 - PYRAB - Pyrococcus abyssi - species - - - - PYRHO - - 53953 - PYRHO - Pyrococcus horikoshii - species - - - - - - - a_55 - - NANEQ - - 228908 - NANEQ - Nanoarchaeum equitans (strain Kin4-M) - - - - - 436308 - NITMS - Nitrosopumilus maritimus (strain SCM1) - - - - - - - 2301 - Thermoplasmatales - order - - - a_59 - - 2302 - Thermoplasma - genus - - - THEAC - - 273075 - THEAC - Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) - - - - THEVO - - 273116 - THEVO - Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1) - - - - - PICTO - - 263820 - PICTO - Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) - - - - - - a_93 - - - 183924 - Thermoprotei - class - - - a_83 - - a_81 - - a_73 - - 2267 - Thermoproteaceae - family - - - a_71 - - a_67 - - 2276 - Pyrobaculum - genus - - - a_65 - - PYRAR - - 340102 - PYRAR - Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) - - - - PYRCJ - - 410359 - PYRCJ - Pyrobaculum calidifontis (strain JCM 11548 / VA1) - - - - - PYRAE - - 13773 - PYRAE - Pyrobaculum aerophilum - species - - - - - a_70 - - PYRIL - - 384616 - PYRIL - Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) - - - - THENV - - 444157 - THENV - Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) - - - - - - - 397948 - CALMQ - Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167) - - - - - a_80 - - 118883 - Sulfolobaceae - family - - - a_78 - - 2284 - Sulfolobus - genus - - - a_76 - - SULAC - - 2285 - SULAC - Sulfolobus acidocaldarius - species - - - - SULTO - - 273063 - SULTO - Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) - - - - - SULSO - - 2287 - SULSO - Sulfolobus solfataricus - species - - - - - METS5 - - 399549 - METS5 - Metallosphaera sedula (strain ATCC 51363 / DSM 5348) - - - - - - AERPE - - 56636 - AERPE - Aeropyrum pernix - species - - - - - a_90 - - a_88 - - a_86 - - STAMF - - 399550 - STAMF - Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) - - - - THEPD - - 368408 - THEPD - Thermofilum pendens (strain Hrk 5) - - - - - HYPBU - - 415426 - HYPBU - Hyperthermus butylicus (strain DSM 5456 / JCM 9403) - - - - - IGNH4 - - 453591 - IGNH4 - Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) - - - - - - - 374847 - KORCO - Korarchaeum cryptofilum (strain OPF8) - - - - - - - - 2 - Bacteria - superkingdom - - - b_278 - - b_268 - - b_226 - - b_200 - - b_194 - - b_104 - - b_80 - - - 1224 - Proteobacteria - phylum - - - b_52 - - b_44 - - b_30 - - b_24 - - 1236 - Gammaproteobacteria - class - - - b_16 - - b_10 - - 543 - Enterobacteriaceae - family - - - b_8 - - b_6 - - b_4 - - b_2 - - 561 - Escherichia - genus - - - ECOLI - - 83333 - ECOLI - Escherichia coli (strain K12) - - - - ECO57 - - 83334 - ECO57 - Escherichia coli O157:H7 - - - - - SHIFL - - 623 - SHIFL - Shigella flexneri - species - - - - - SALTY - - 90371 - SALTY - Salmonella typhimurium - - - - - YERPE - - 632 - YERPE - Yersinia pestis - species - - - - - PHOLU - - 29488 - PHOLU - Photorhabdus luminescens - Xenorhabdus luminescens - species - - - - - b_15 - - b_13 - - 641 - Vibrionaceae - family - - - PHOPR - - 74109 - PHOPR - Photobacterium profundum - Photobacterium sp. (strain SS9) - species - - - - VIBCH - - 666 - VIBCH - Vibrio cholerae - species - - - - - SHEDO - - 318161 - SHEDO - Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) - - - - - - b_23 - - b_21 - - 286 - Pseudomonas - genus - - - b_19 - - PSEF5 - - 220664 - PSEF5 - Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) - - - - PSEPF - - 205922 - PSEPF - Pseudomonas fluorescens (strain Pf0-1) - - - - - PSEAE - - 287 - PSEAE - Pseudomonas aeruginosa - species - - - - - CHRSD - - 290398 - CHRSD - Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) - - - - - - b_29 - - 28216 - Betaproteobacteria - class - - - DECAR - - 159087 - DECAR - Dechloromonas aromatica (strain RCB) - - - - RALME - - 266264 - RALME - Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) - - - - - - b_43 - - b_41 - - b_35 - - 28216 - Betaproteobacteria - class - - - b_33 - - 206379 - Nitrosomonadaceae - family - - - NITEU - - 915 - NITEU - Nitrosomonas europaea - species - - - - NITMU - - 323848 - NITMU - Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) - - - - - THIDE - - 36861 - THIDE - Thiobacillus denitrificans - species - - - - - b_40 - - 135613 - Chromatiales - order - - - b_38 - - 72276 - Ectothiorhodospiraceae - purple sulfur bacteria - family - - - ALHEH - - 187272 - ALHEH - Alkalilimnicola ehrlichei (strain MLHE-1) - - - - HALHL - - 349124 - HALHL - Halorhodospira halophila (strain DSM 244 / SL1) - Ectothiorhodospira halophila (strain DSM 244 / SL1) - - - - - NITOC - - 323261 - NITOC - Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) - - - - - - THICR - - 317025 - THICR - Thiomicrospira crunogena (strain XCL-2) - - - - - - b_51 - - 1236 - Gammaproteobacteria - class - - - b_47 - - IDILO - - 135577 - IDILO - Idiomarina loihiensis - species - - - - LEGPN - - 446 - LEGPN - Legionella pneumophila - species - - - - - b_50 - - 32033 - Xanthomonadaceae - family - - - XANAC - - 92829 - XANAC - Xanthomonas axonopodis pv. citri - Citrus canker - - - - XYLFT - - 183190 - XYLFT - Xylella fastidiosa (strain Temecula1 / ATCC 700964) - - - - - - - b_71 - - 28211 - Alphaproteobacteria - class - - - b_67 - - b_65 - - b_61 - - 356 - Rhizobiales - order - - - b_57 - - 227290 - Rhizobium/Agrobacterium group - - - AGRT5 - - 176299 - AGRT5 - Agrobacterium tumefaciens (strain C58 / ATCC 33970) - - - - RHIEC - - 347834 - RHIEC - Rhizobium etli (strain CFN 42 / ATCC 51251) - - - - - b_60 - - 41294 - Bradyrhizobiaceae - family - - - BRAJA - - 375 - BRAJA - Bradyrhizobium japonicum - species - - - - RHOPT - - 395960 - RHOPT - Rhodopseudomonas palustris (strain TIE-1) - - - - - - b_64 - - 31989 - Rhodobacteraceae - family - - - RHOS1 - - 349101 - RHOS1 - Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) - - - - ROSDO - - 375451 - ROSDO - Roseobacter denitrificans (strain ATCC 33942 / OCh 114) - Erythrobacter sp. (strain OCh 114) - Roseobacter denitrificans - - - - - - CAUCR - - 155892 - CAUCR - Caulobacter crescentus - Caulobacter vibrioides - species - - - - - b_70 - - 204441 - Rhodospirillales - order - - - ACICY - - 524 - ACICY - Acidiphilium cryptum - species - - - - RHORU - - 1085 - RHORU - Rhodospirillum rubrum - species - - - - - - - b_79 - - b_77 - - 1224 - Proteobacteria - phylum - - - b_75 - - 712 - Pasteurellaceae - family - - - HAEIN - - 727 - HAEIN - Haemophilus influenzae - species - - - - PASMU - - 747 - PASMU - Pasteurella multocida - species - - - - - NEIME - - 487 - NEIME - Neisseria meningitidis - species - - - - - ACIFE - - 905 - ACIFE - Acidaminococcus fermentans - species - - - - - - b_103 - - b_91 - - 28221 - Deltaproteobacteria - class - - - b_87 - - b_83 - - DESPS - - 84980 - DESPS - Desulfotalea psychrophila - species - - - - DESDE - - 876 - DESDE - Desulfovibrio desulfuricans - species - - - - - SYNAS - - 56780 - SYNAS - Syntrophus aciditrophicus (strain SB) - - - - - b_90 - - 28231 - Geobacter - genus - - - GEOME - - 28232 - GEOME - Geobacter metallireducens - species - - - - GEOSL - - 35554 - GEOSL - Geobacter sulfurreducens - species - - - - - - b_102 - - b_98 - - b_94 - - 31 - Myxococcaceae - family - - - ANADE - - 290397 - ANADE - Anaeromyxobacter dehalogenans (strain 2CP-C) - - - - MYXXA - - 34 - MYXXA - Myxococcus xanthus - species - - - - - b_97 - - 57723 - Acidobacteria - phylum - - - ACIBL - - 204669 - ACIBL - Acidobacteria bacterium (strain Ellin345) - - - - SOLUS - - 332163 - SOLUS - Solibacter usitatus - species - - - - - - RHOBA - - 265606 - RHOBA - Rhodopirellula baltica - species - - - - - - - b_193 - - b_163 - - b_133 - - Chloroflexi & Actinobacteria - - - 201174 - Actinobacteria - phylum - - - - 2037 - Actinomycetales - order - - - b_115 - - KINRD - - 266940 - KINRD - Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) - - - - KOCRD - - 378753 - KOCRD - Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) - - - - - 1032480 - MICPN - Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) - Microlunatus phosphovorus NM-1 - strain - - - - STRCO - - 1902 - STRCO - Streptomyces coelicolor - species - - - - THEFY - - 269800 - THEFY - Thermobifida fusca (strain YX) - - - - - - 85007 - Corynebacterineae - suborder - - - - 1763 - Mycobacterium - genus - - - MYCLE - - 1769 - MYCLE - Mycobacterium leprae - species - - - - MYCTU - - 1773 - MYCTU - Mycobacterium tuberculosis - species - - - - - CORJK - - 306537 - CORJK - Corynebacterium jeikeium (strain K411) - - - - - 632772 - RHOOB - Rhodococcus opacus (strain B4) - strain - - - - - - RUBXD - - 266117 - RUBXD - Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) - - - - - - 200795 - Chloroflexi - GNS bacteria - Thermomicrobia - phylum - - - - 32061 - Chloroflexi (class) - Chloroflecales - Chloroflexus/Deinococcus group - class - - - b_122 - - 1106 - Chloroflexaceae - filamentous anoxygenic phototrophic bacteria - family - - - CHLAU - - 1108 - CHLAU - Chloroflexus aurantiacus - species - - - - - 383372 - ROSCS - Roseiflexus castenholzii (strain DSM 13941 / HLO8) - species - - - - - HERAU - - 65 - HERAU - Herpetosiphon aurantiacus - Herpetosiphon giganteus - species - - - - - - 479434 - SPHTD - Sphaerobacter thermophilus (strain DSM 20745 / S 6022) - strain - - - - - - b_132 - - 188787 - Deinococci - class - - - b_130 - - 1298 - Deinococcus - genus - - - DEIGD - - 319795 - DEIGD - Deinococcus geothermalis (strain DSM 11300) - - - - DEIRA - - 1299 - DEIRA - Deinococcus radiodurans - species - - - - - THETH - - 274 - THETH - Thermus thermophilus - species - - - - - - b_162 - - 1117 - Cyanobacteria - phylum - - - b_154 - - b_152 - - b_146 - - b_144 - - b_142 - - b_138 - - 1162 - Nostocaceae - family - - - b_136 - - ANAVA - - 1172 - ANAVA - Anabaena variabilis - species - - - - NOSS7 - - 28072 - NOSS7 - Nostoc sp. (strain PCC 7524) - species - - - - - NOSP7 - - 63737 - NOSP7 - Nostoc punctiforme (strain ATCC 29133 / PCC 73102) - - - - - ACAMR - - 155978 - ACAMR - Acaryochloris marina - species - - - - - MICAN - - 449447 - MICAN - Microcystis aeruginosa (strain NIES-843) - - - - - TRIER - - 1206 - TRIER - Trichodesmium erythraeum - species - - - - - b_149 - - 1118 - Chroococcales - order - - - SYNEL - - 32046 - SYNEL - Synechococcus elongatus - species - - - - SYNY3 - - 1148 - SYNY3 - Synechocystis sp. (strain PCC 6803) - species - - - - - - GLOVI - - 33072 - GLOVI - Gloeobacter violaceus - species - - - - - b_161 - - b_159 - - 1218 - Prochlorococcus - genus - - - b_157 - - PROMA - - 1219 - PROMA - Prochlorococcus marinus - species - - - - PROMP - - 59919 - PROMP - Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) - - - - - PROMM - - 74547 - PROMM - Prochlorococcus marinus (strain MIT 9313) - - - - - SYNS3 - - 64471 - SYNS3 - Synechococcus sp. (strain CC9311) - species - - - - - - - b_192 - - b_190 - - b_178 - - b_176 - - 191412 - Chlorobiaceae - family - - - b_170 - - b_166 - - CHLPB - - 331678 - CHLPB - Chlorobium phaeobacteroides (strain BS1) - - - - PROAE - - 1102 - PROAE - Prosthecochloris aestuarii - species - - - - - b_169 - - 274493 - Chlorobium/Pelodictyon group - - - PELLU - - 1100 - PELLU - Pelodictyon luteolum - species - - - - PROVI - - 290318 - PROVI - Prosthecochloris vibrioformis (strain DSM 265) - Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265) - Chlorobium phaeovibrioides (strain DSM 265) - - - - - - b_175 - - b_173 - - 256319 - Chlorobaculum - genus - - - CHLP8 - - 517417 - CHLP8 - Chlorobaculum parvum (strain NCIB 8327) - Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327) - - - - CHLTE - - 1097 - CHLTE - Chlorobium tepidum - species - - - - - CHLCH - - 340177 - CHLCH - Chlorobium chlorochromatii (strain CaD3) - - - - - - CHLTA - - 315277 - CHLTA - Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) - - - - - b_189 - - 976 - Bacteroidetes - phylum - - - b_183 - - b_181 - - 49546 - Flavobacteriaceae - family - - - FLAJO - - 986 - FLAJO - Flavobacterium johnsoniae - Cytophaga johnsonae - species - - - - GRAFK - - 411154 - GRAFK - Gramella forsetii (strain KT0803) - - - - - CYTH3 - - 269798 - CYTH3 - Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) - - - - - b_188 - - 171549 - Bacteroidales - order - - - b_186 - - 816 - Bacteroides - genus - - - BACFR - - 817 - BACFR - Bacteroides fragilis - species - - - - BACTN - - 818 - BACTN - Bacteroides thetaiotaomicron - species - - - - - PORGI - - 837 - PORGI - Porphyromonas gingivalis - Bacteroides gingivalis - species - - - - - - - SALRD - - 309807 - SALRD - Salinibacter ruber (strain DSM 13855 / M31) - - - - - - - b_199 - - b_197 - - Verrucomicrobia - - - AKKM8 - - 349741 - AKKM8 - Akkermansia muciniphila (strain ATCC BAA-835) - - - - METI4 - - 481448 - METI4 - Methylacidiphilum infernorum (isolate V4) - Methylokorus infernorum (strain V4) - - - - - LEPIC - - 44275 - LEPIC - Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni - - - - - - b_225 - - b_219 - - 1239 - Firmicutes - phylum - - - b_213 - - - 1385 - Bacillales - order - - - - 186817 - Bacillaceae - family - - - - 1386 - Bacillus - genus - - - - 86661 - Bacillus cereus group - - - BACAN - - 1392 - BACAN - Bacillus anthracis - species - - - - - 572264 - BACC3 - Bacillus cereus (strain 03BB102) - strain - - - - - - 1423 - BACSU - Bacillus subtilis - species - - - - - b_206 - - BACHD - - 86665 - BACHD - Bacillus halodurans - species - - - - GEOKA - - 1462 - GEOKA - Geobacillus kaustophilus - species - - - - - - b_210 - - LISMO - - 1639 - LISMO - Listeria monocytogenes - species - - - - STAAU - - 1280 - STAAU - Staphylococcus aureus - species - - - - - - CLOP1 - - 195103 - CLOP1 - Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) - - - - - Clostridia - - 186801 - Clostridia - class - - - b_218 - - b_216 - - 186814 - Thermoanaerobacteriaceae - family - - - CARHZ - - 246194 - CARHZ - Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) - - - - THETN - - 119072 - THETN - Thermoanaerobacter tengcongensis - species - - - - - DESHA - - 49338 - DESHA - Desulfitobacterium hafniense - Desulfitobacterium frappieri - species - - - - - EUBR3 - - 515619 - EUBR3 - Eubacterium rectale (strain ATCC 33656 / VPI 0990) - - - - - - b_224 - - 188709 - Thermotogaceae - family - - - b_222 - - FERNB - - 381764 - FERNB - Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) - - - - THELT - - 416591 - THELT - Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) - - - - - THEMA - - 2336 - THEMA - Thermotoga maritima - species - - - - - - - b_267 - - b_263 - - b_251 - - b_249 - - b_245 - - b_237 - - b_233 - - 31969 - Mollicutes - class - - - b_231 - - b_229 - - Mycoplasma - - - MYCGE - - 2097 - MYCGE - Mycoplasma genitalium - species - - - - MYCPN - - 2104 - MYCPN - Mycoplasma pneumoniae - species - - - - - MESFL - - 2151 - MESFL - Mesoplasma florum - Acholeplasma florum - species - - - - - UREPA - - 134821 - UREPA - Ureaplasma parvum - Ureaplasma urealyticum biotype 1 - species - - - - - b_236 - - 137 - Spirochaetaceae - family - - - BORBU - - 139 - BORBU - Borrelia burgdorferi - Lyme disease spirochete - species - - - - TREPA - - 160 - TREPA - Treponema pallidum - species - - - - - - b_244 - - b_242 - - 1113537 - Chlamydia/Chlamydophila group - - - b_240 - - CHLPN - - 83558 - CHLPN - Chlamydia pneumoniae - Chlamydophila pneumoniae - species - - - - CHLFF - - 264202 - CHLFF - Chlamydophila felis (strain Fe/C-56) - - - - - CHLMU - - 83560 - CHLMU - Chlamydia muridarum - species - - - - - RICTY - - 785 - RICTY - Rickettsia typhi - species - - - - - - - 28211 - Alphaproteobacteria - class - - - - 38323 - BARHE - Bartonella henselae - Rochalimaea henselae - species - - - - - 198252 - PELUB - Pelagibacter ubique - species - - - - - 780 - Rickettsia - genus - - - - 391896 - RICB8 - Rickettsia bellii (strain OSU 85-389) - - - - - 452659 - RICRO - Rickettsia rickettsii (strain Iowa) - strain - - - - - - - FRATU - - 263 - FRATU - Francisella tularensis - species - - - - - b_262 - - b_260 - - b_258 - - 186826 - Lactobacillales - order - - - b_256 - - 1300 - Streptococcaceae - family - - - b_254 - - 1301 - Streptococcus - genus - - - STRPN - - 1313 - STRPN - Streptococcus pneumoniae - species - - - - STRPY - - 1314 - STRPY - Streptococcus pyogenes - species - - - - - LACLA - - 1360 - LACLA - Lactococcus lactis subsp. lactis - Streptococcus lactis - subspecies - - - - - LACAC - - 1579 - LACAC - Lactobacillus acidophilus - species - - - - - BIFLO - - 216816 - BIFLO - Bifidobacterium longum - species - - - - - FUSNU - - 851 - FUSNU - Fusobacterium nucleatum - species - - - - - - b_266 - - 61434 - Dehalococcoides - genus - - - DEHE1 - - 243164 - DEHE1 - Dehalococcoides ethenogenes (strain 195) - - - - DEHSB - - 216389 - DEHSB - Dehalococcoides sp. (strain BAV1) - species - - - - - - - b_277 - - 29547 - Epsilonproteobacteria - class - - - b_273 - - NITSB - - 387092 - NITSB - Nitratiruptor sp. (strain SB155-2) - species - - - - SULNB - - 387093 - SULNB - Sulfurovum sp. (strain NBC37-1) - species - - - - - b_276 - - 213849 - Campylobacterales - order - - - CAMJE - - 197 - CAMJE - Campylobacter jejuni - species - - - - HELPH - - 357544 - HELPH - Helicobacter pylori (strain HPAG1) - - - - - - - AQUAE - - 63363 - AQUAE - Aquifex aeolicus - species - - - - - + + + + + cellular organisms + + + Neomura + + + + 2759 + Eukaryota + superkingdom + + + Unikonta + + + 33154 + Opisthokonta + Fungi/Metazoa group + + + + Holozoa + + + Choanoflagellatea & Metazoa + + + 33208 + Metazoa + kingdom + + + Eumetazoa + + + + Bilateria & Cnidaria + + Bilateria + + Deuterostomia + + + + + 7711 + Chordata + phylum + + + Urochordata & Vertebrata + + + 7742 + Vertebrata + + + + 7776 + Gnathostomata + jawed vertebrates + superclass + + + + 117571 + Euteleostomi + + + Tetrapoda + + Amniota + + + 40674 + Mammalia + class + + + Theria + + + 9347 + Eutheria + Placental mammals + + + The new framework for understanding placental mammal evolution + + + + Boreoeutheria + Boreotheria + + 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+ + 61853 + NOMLE + Nomascus leucogenys + Northern white-cheeked gibbon + Hylobates leucogenys + Hylobates concolor leucogenys + species + http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png + http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg + + + + + + 9528 + Cercopithecinae + subfamily + + + + 9544 + MACMU + Macaca mulatta + Rhesus macaque + species + http://www.our-pets.net/images/rhesus1.jpg + + + + + 9557 + PAPHA + Papio hamadryas + Hamadryas baboon + species + http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg + + + + + + + 9483 + CALJA + Callithrix jacchus + White-tufted-ear marmoset + Callithrix jacchus jacchus + species + http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg + + + + + + 9478 + TARSY + Tarsius syrichta + Philippine tarsier + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg + + + + + + 376911 + Strepsirrhini + suborder + + + + 30608 + MICMU + Microcebus murinus + Lesser mouse lemur + species + http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg + + + + + 30611 + OTOGA + Otolemur garnettii + Garnett's greater bushbaby + Galago garnetti + Small-eared galago + Garnett's greater bushbaby + species + http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg + + + + + + + 37347 + TUPBE + Tupaia belangeri + Common tree shrew + Tupaia glis belangeri + species + http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG + + + + + + 314147 + Glires + Rodents and rabbits + + + + 9989 + Rodentia + order + + + Ctenohystrica & Mouse-related clade + + Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades. + + + + Mouse-related clade + + + + 337687 + Muroidea + + + + 39107 + Murinae + subfamily + + + + 10090 + MOUSE + Mus musculus + Mouse + species + http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg + + + + + 10116 + RAT + Rattus norvegicus + Rat + species + http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg + + + + + + 10036 + MESAU + Mesocricetus auratus + Golden hamster + species + http://www.dicts.info/img/ud/syrian_hamster.jpg + + + + + + 10020 + DIPOR + Dipodomys ordii + Ord's kangaroo rat + species + http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg + + + + + + 10141 + CAVPO + Cavia porcellus + Guinea pig + species + http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg + + + + + + 43179 + SPETR + Spermophilus tridecemlineatus + Thirteen-lined ground squirrel + Ictidomys tridecemlineatus + species + http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg + + + + + + 9975 + Lagomorpha + Rabbits, hares, pikas + order + + + + 9978 + OCHPR + Ochotona princeps + Southern American pika + species + http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg + + + + + 9986 + RABIT + Oryctolagus cuniculus + Rabbit + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg + + + + + + + + 314145 + Laurasiatheria + superorder + + + + Scrotifera + + + Perissodactyla & Cetartiodactyla & Chiroptera + + Perissodactyla & Cetartiodactyla + + + 91561 + Cetartiodactyla + Even-toed ungulates + + + Cetruminantia & Suina + + + Cetruminantia + + + + 9895 + Bovidae + family + + + + 9913 + BOVIN + Bos taurus + Bovine + Bos bovis + species + http://bioweb.uwlax.edu/bio203/s2007/hayes_katy/images/DSC01638.JPG + + + + + 9940 + SHEEP + Ovis aries + Sheep + species + http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg + + + + + + 9721 + Cetacea + Whales + order + + + + 9771 + BALMU + Balaenoptera musculus + Blue whale + species + http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg + + + + + 9739 + TURTR + Tursiops truncatus + Atlantic bottle-nosed dolphin + Delphinus truncatus + species + http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg + + + + + + + 9823 + PIG + Sus scrofa + Pig + species + http://www.batraciens-reptiles.com/sus%20scrofa2.jpg + + + + + + 30538 + LAMPA + Lama guanicoe pacos + Alpaca + Lama pacos + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg + + + + + + 9796 + HORSE + Equus caballus + Horse + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg + + + + + + 9397 + Chiroptera + Bats + order + + + + 59463 + MYOLU + Myotis lucifugus + Little brown bat + species + http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg + + + + + 132908 + PTEVA + Pteropus vampyrus + Large flying fox + species + http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg + + + + + + Carnivora + + 33554 + Carnivora + order + + + + 379584 + Caniformia + suborder + + + + 9646 + AILME + Ailuropoda melanoleuca + Giant panda + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg + + + + + 9615 + CANFA + Canis familiaris + Dog + Canis lupus familiaris + subspecies + http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG + + + + + + 9685 + FELCA + Felis catus + Cat + Felis silvestris catus + species + http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg + + + + + + + 9362 + Insectivora + hedgehogs, shrews, moles and others + order + + + + 9365 + ERIEU + Erinaceus europaeus + Western European hedgehog + species + http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg + + + + + 42254 + SORAR + Sorex araneus + Eurasian common shrew + European shrew + species + http://www.batraciens-reptiles.com/musaraigne2.jpg + + + + + + + + Atlantogenata + + + + 311790 + Afrotheria + superorder + + + + Paenungulata + + + + 9785 + LOXAF + Loxodonta africana + African savanna elephant + species + http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg + + + + + 9813 + PROCA + Procavia capensis + Cape hyrax + Rock dassie + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg + + + + + + 9371 + ECHTE + Echinops telfairi + Lesser hedgehog tenrec + species + http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg + + + + + + 9348 + Xenarthra + Edentata + superorder + + + + 9358 + CHOHO + Choloepus hoffmanni + Hoffmann's two-fingered sloth + species + http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg + + + + + 9361 + DASNO + Dasypus novemcinctus + Nine-banded armadillo + species + http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg + + + + + + + + 9263 + Metatheria + Marsupials + + + First combined cladistic analysis of marsupial mammal interrelationships + + + + + + Eometatheria + + + + 9315 + MACEU + Macropus eugenii + Tammar wallaby + species + http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg + + + + + 9305 + SARHA + Sarcophilus harrisii + Tasmanian devil + Sarcophilus laniarius + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg + + + + + + 13616 + MONDO + Monodelphis domestica + Short-tailed gray opossum + species + http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg + + + + + + + 9258 + ORNAN + Ornithorhynchus anatinus + Duckbill platypus + species + http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png + + + + + + 8457 + Sauropsida + + + Archosauria & Testudines + + The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan + + + + + + + + 8492 + Archosauria + + + Neognathae + + 8825 + Neognathae + superorder + + + Phasianidae & Anatidae (waterfowl) + + + 9005 + Phasianidae + family + + + + 9031 + CHICK + Gallus gallus + Chicken + Gallus domesticus + species + http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg + + + + + 9103 + MELGA + Meleagris gallopavo + Common turkey + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg + + + + + + 8839 + ANAPL + Anas platyrhynchos + Domestic duck + Anas boschas + species + http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg + + + + + + 59729 + TAEGU + Taeniopygia guttata + Zebra finch + Poephila guttata + species + http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg + + + + + + 8496 + ALLMI + Alligator mississippiensis + American alligator + species + http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg + + + + + + 13735 + PELSI + Pelodiscus sinensis + (Wiegmann, 1835) Cox et al. 1998 + Chinese softshell turtle + Trionyx sinensis + species + http://www.chelonia.org/PsinensisTR1.jpg + + + + + + 28377 + ANOCA + Anolis carolinensis + Voigt, 1832 + Green anole + American chameleon + species + http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg + http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg + http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Anolis_carolinensis.jpg/800px-Anolis_carolinensis.jpg + + + + + + + 8353 + Xenopus + genus + + + + 8355 + XENLA + Xenopus laevis + Daudin, 1802 + African clawed frog + Bufo laevis + species + http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg + + + + + 8364 + XENTR + Xenopus tropicalis + Western clawed frog + Silurana tropicalis + species + http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg + + + + + + Teleostei + + 32443 + Teleostei + + + + 123368 + Acanthomorpha + + + + 32485 + Percomorpha + + + + 129949 + Smegmamorpha + + + + 32456 + Atherinomorpha + + + + 8090 + ORYLA + Oryzias latipes + Medaka fish + Japanese ricefish + species + http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg + + + + + 8083 + XIPMA + Xiphophorus maculatus + Guenther, 1866 + Southern platyfish + Platypoecilus maculatus + species + http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg + + + + + + 69293 + GASAC + Gasterosteus aculeatus + Three-spined stickleback + species + http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg + + + + + + 31031 + Tetraodontidae + puffers + family + + + + 31033 + TAKRU + Takifugu rubripes + Japanese pufferfish + Fugu rubripes + species + http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg + + + + + 99883 + TETNG + Tetraodon nigroviridis + Green puffer + Chelonodon nigroviridis + species + http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg + + + + + + 8128 + ORENI + Tilapia nilotica + Linnaeus, 1758 + Nile tilapia + Tilapia nilotica + species + http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg + + + + + + 8049 + GADMO + Gadus morhua + Atlantic cod + species + http://www.marinbi.com/g-morhua.jpg + + + + + + 7955 + DANRE + Danio rerio + Zebrafish + Brachydanio rerio + species + http://fishbase.org.cn/images/species/Darer_m0.jpg + + + + + + + 7868 + CALMI + Callorhynchus milii + Australian ghost shark + Australian ghost shark + species + http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg + + + + + + 7757 + PETMA + Petromyzon marinus + Sea lamprey + species + http://www.uk-fish.info/pics/sealampray01.jpg + + + + + Urochordata + + 7712 + Urochordata + subphylum + + + + 7718 + Ciona + genus + + + + 7719 + CIOIN + Ciona intestinalis + Transparent sea squirt + Ascidia intestinalis + species + http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg + + + + + 51511 + CIOSA + Ciona savignyi + Pacific transparent sea squirt + species + http://www.pnwscuba.com/invasives/photos/ciona4.jpg + + + + + + 34765 + OIKDI + Oikopleura dioica + Tunicate + species + http://jellieszone.com/images/oikopleura.jpg + + + + + + + 7739 + BRAFL + Branchiostoma floridae + Florida lancelet + Amphioxus + species + http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg + + + + + Hemichordata & Echinodermata + + + 10224 + SACKO + Saccoglossus kowalevskii + Agassiz, 1873 + Acorn worm + species + http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg + + + + + 7668 + STRPU + Strongylocentrotus purpuratus + Purple sea urchin + species + http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg + + + + + + Protostomia + + Ecdysozoa + + + 6656 + Arthropoda + phylum + + + + 197563 + Mandibulata + + + Pancrustacea + + + 33340 + Neoptera + subclass + + + + 33392 + Endopterygota + infraclass + + + Hymenoptera & Lepidoptera & Diptera + + Lepidoptera & Diptera + + + 7147 + Diptera + order + + + + 7215 + Drosophila + fruit flies + genus + + + The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research + + + + 32341 + Sophophora + subgenus + + + melanogaster & pseudoobscura subgroups + + + 32346 + melanogaster group + + + + 32351 + melanogaster subgroup + + + DROSE & DROSI & DROME & DROYA + + DROSE & DROSI & DROME + + DROSE & DROSI + + + 7238 + DROSE + Drosophila sechellia + Fruit fly + species + + + + + 7240 + DROSI + Drosophila simulans + Fruit fly + species + + + + + + 7227 + DROME + Drosophila melanogaster + Fruit fly + species + http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg + + + + + + 7245 + DROYA + Drosophila yakuba + Fruit fly + species + + + + + + 7220 + DROER + Drosophila erecta + Fruit fly + species + + + + + + 7217 + DROAN + Drosophila ananassae + Fruit fly + species + + + + + + 32358 + pseudoobscura subgroup + + + + 7234 + DROPE + Drosophila persimilis + Fruit fly + species + + + + + 46245 + DROPS + Drosophila pseudoobscura pseudoobscura + Fruit fly + subspecies + http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg + + + + + + + 7260 + DROWI + Drosophila willistoni + Fruit fly + species + + + + + Drosophila subgenus & Hawaiian Drosophila + + + Drosophila + subgenus + + + + 7230 + DROMO + Drosophila mojavensis + Fruit fly + species + + + + + 7244 + DROVI + Drosophila virilis + Fruit fly + species + + + + + + 7222 + DROGR + Drosophila grimshawi + Fruit fly + Idiomyia grimshawi + species + http://www.pacificislandbooks.com/fruitf~1.jpg + + + + + + + 7157 + Culicidae + mosquitos + family + + + + 7159 + AEDAE + Aedes aegypti + Yellowfever mosquito + Culex aegypti + species + http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg + + + + + 7165 + ANOGA + Anopheles gambiae + African malaria mosquito + species + http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg + + + + + 7175 + CULPI + Culex pipiens + House mosquito + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg + + + + + + + 7091 + BOMMO + Bombyx mori + Silk moth + species + http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg + + + + + + 7400 + Apocrita + wasps, ants and bees + + + + 7434 + Aculeata + suborder + + + + 7460 + APIME + Apis mellifera + Honeybee + species + http://www.floridanature.org/photos/Apis_mellifera_6b_&_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg + + + + + 12957 + ATTCE + Atta cephalotes + Linnaeus, 1758 + Leafcutter ant + species + http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg + + + + + + 7425 + NASVI + Nasonia vitripennis + Parasitic wasp + species + http://www.freshpond.org/nasonia.jpg + + + + + + + 7070 + TRICA + Tribolium castaneum + Red flour beetle + species + http://www.ars.usda.gov/sp2UserFiles/Place/54300530/proj/tribolium/rfb.jpg + + + + + + 33342 + Paraneoptera + infraclass + + + + 7524 + Hemiptera + order + + + + 7029 + ACYPI + Acyrthosiphon pisum + Pea aphid + species + http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg + + + + + 13249 + RHOPR + Rhodnius prolixus + Triatomid bug + species + http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg + + + + + + 121224 + PEDHC + Pediculus humanus subsp. corporis + Body louse + subspecies + http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg + + + + + + + 6658 + Branchiopoda + class + + + + 6661 + ARTSF + Artemia franciscana + Brine shrimp + Artemia sanfranciscana + species + http://www.alireza-asem.ir/images/Artemia.jpg + + + + + 6669 + DAPPU + Daphnia pulex + Water flea + species + http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg + + + + + + + 61985 + Myriapoda + subphylum + + + + 7553 + Diplopoda + millipedes + class + + + + 118561 + Helminthomorpha + subclass + + + + 364406 + Antrokoreana gracilipes + species + http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg + + + + + 174156 + NARAN + Narceus annularis + Millipede + species + http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg + + + + + + 52428 + Polyxenus lagurus + bristly millipede + species + http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg + + + + + + 7540 + Chilopoda + centipedes + class + + + + 29022 + SCUCO + Scutigera coleoptrata + House centipede + species + http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG + + + + + 126957 + Strigamia maritima + species + http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg + + + + + + + + 6945 + IXOSC + Ixodes scapularis + Black-legged tick + Deer tick + species + http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg + + + + + + 119089 + Chromadorea + class + + + + + nematode Clade V + + + 6237 + Caenorhabditis + genus + + + Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss + + + CAEBR & CAERE & CAEBE & CAEEL + + CAEBR & CAERE & CAEBE + + CAEBR & CAERE + + + 6238 + CAEBR + Caenorhabditis briggsae + species + http://www.life.umd.edu/biology/haag/briggsae_herm.jpg + + + + + 31234 + CAERE + Caenorhabditis remanei + Caenorhabditis vulgaris + species + http://lemur.amu.edu.pl/share/php/mirnest/species_images/Caenorhabditis_remanei.jpg + + + + + + 135651 + CAEBE + Caenorhabditis brenneri + Nematode worm + Caenorhabditis CB5161 + species + + + + + + 6239 + CAEEL + Caenorhabditis elegans + species + http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif + + + + + + 281687 + CAEJA + Caenorhabditis japonica + species + + + + + + 54126 + PRIPA + Pristionchus pacificus + species + http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg + + + + + + 6279 + BRUMA + Brugia malayi + Filarial nematode worm + species + http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG + + + + + + Lophotrochozoa + + Annelida & Mollusca + + + 6447 + Mollusca + phylum + + + + 6448 + Gastropoda + class + + + + 6500 + APLCA + Aplysia californica + California sea hare + species + http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg + + + + + 225164 + LOTGI + Lottia gigantea + Owl limpet + species + http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg + + + + + + 6545 + Pteriomorphia + Pteriomorpha + subclass + + + + 29159 + CRAGI + Crassostrea gigas + Thunberg, 1793 + Pacific oyster + Crassotrea gigas + Crassostrea angulata + Ostrea gigas + species + http://www.marlin.ac.uk/imgs/o_cragig.jpg + + + + + 50426 + PINFU + Pinctada fucata + Pearl oyster + species + http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg + + + + + + + 6340 + Annelida + phylum + + + + 283909 + CTEXX + Capitella teleta + Blake, Grassle & Eckelbarger, 2009 + Capitella sp. I + species + http://genome.jgi-psf.org/Capca1/capitella.jpg + + + + + 6412 + HELRO + Helobdella robusta + Californian leech + species + http://genome.jgi-psf.org/Helro1/Helro_leech.jpg + + + + + + + 6157 + Platyhelminthes + phylum + + + + 6183 + SCHMA + Schistosoma mansoni + Blood fluke + species + http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg + + + + + 79327 + SCHMD + Schmidtea mediterranea + Freshwater planarian flatworm + species + http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg + + + + + + + + Cnidaria + + 6073 + Cnidaria + phylum + + + + 6102 + Hexacorallia + Ceriantipatharia + Zoantharia + subclass + + + + 70779 + ACRDI + Acropora digitifera + Staghorn coral + species + http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg + + + + + 45351 + NEMVE + Nematostella vectensis + Starlet sea anemone + species + http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg + + + + + + 6085 + HMAXX + Hydra magnipapillata + Ito, 1947 + species + http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif + + + + + + + 10228 + TRIAD + Trichoplax adhaerens + Trichoplax reptans + species + http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg + + + + + + + + 27923 + MNELE + Mnemiopsis leidyi + A. gassiz, 1865 + Sea walnut + species + http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg + http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg + + + + + 400682 + AMPQE + Amphimedon queenslandica + Hooper & Van Soest, 2006 + Sponge + Reniera sp. JGI-2005 + species + http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg + + + + + + 81524 + Codonosigidae + family + + + + 81824 + MONBE + Monosiga brevicollis + Choanoflagellate + species + http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg + + + + + 946362 + SALS5 + Salpingoeca rosetta + Proterospongia sp. ATCC 50818 + Salpingoeca sp. ATCC 50818 + species + http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg + + + + + + Ichthyophonida & Filasterea + + + 198625 + Ichthyophonida + order + + + + 4881 + AMOPA + Amoebidium parasiticum + species + http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg + + + + + 72019 + SARXX + Sphaeroforma arctica + species + http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg + + + + + + Filasterea + + + + + + + + 595528 + CAPO3 + Capsaspora owczarzaki (strain ATCC 30864) + http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg + + + + + 134558 + Ministeria vibrans + species + http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg + + + + + + + + Holomycota + Nucletmycea + + + + 4751 + Fungi + kingdom + + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota & Neocallimastigomycota + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota + + Dikarya & Mucoromycotina & Kickxellomycotina + + Dikarya & Mucoromycotina + + + 451864 + Dikarya + subkingdom + + + + + + + + 4890 + Ascomycota + phylum + + + Pezizomycotina & Saccharomycetales + + + 147538 + Pezizomycotina + Euascomycota + subphylum + + + A five-gene phylogeny of Pezizomycotina + + + + + + 716546 + Leotiomyceta + + + Sordariomyceta & Dothideomycetes & Trichocomaceae & Lecanoromycetes + + Sordariomyceta & Dothideomycetes & Lecanoromycetes + + Sordariomyceta & Lecanoromycetes + + + 715989 + Sordariomyceta + + + + 147550 + Sordariomycetes + class + + + Magnaporthales & Hypocreales + + + 5125 + Hypocreales + order + + + + 398408 + AALXX + Acremonium alcalophilum + species + http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg + + + + + 5518 + GIBZE + Gibberella zeae + Wheat head blight fungus + Fusarium graminearum + species + http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg + + + + + 29875 + HYPVI + Hypocrea virens + Gliocladium virens + Trichoderma virens + Gliocladium flavofuscum + species + http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg + + + + + + 148305 + MAGGR + Magnaporthe grisea + Rice blast fungus + Pyricularia grisea + species + http://www.forestryimages.org/images/768x512/5369002.jpg + + + + + + 5139 + Sordariales + order + + + + 35718 + Chaetomiaceae + family + + + + 35719 + Thielavia + genus + + + + 573729 + THIHA + Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799) + (Apinis) Oorschot 1977 + Sporotrichum thermophilum + Myceliophthora thermophila + species + http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg + + + + + 578455 + THITE + Thielavia terrestris (strain ATCC 38088 / NRRL 8126) + Acremonium alabamense + Thielavia terrestris NRRL 8126 + http://genome.jgi-psf.org/public/Thite2/Thite1.jpg + + + + + + 1029505 + CHAGB + Chaetomium globosum + Kunze 1817 + Soil fungus + species + + + + + + 5141 + NEUCR + Neurospora crassa + species + + + + + + + 147548 + Leotiomycetes + class + + + + 28983 + Sclerotiniaceae + family + + + + 40559 + BOTFU + Botryotinia fuckeliana + Noble rot fungus + Botrytis cinerea + species + + + + + 5180 + SCLSC + Sclerotinia sclerotiorum + White mold + Whetzelinia sclerotiorum + species + + + + + + 78148 + Oidiodendron maius + species + + + + + + + 388435 + Lecanoromycetidae + subclass + + + + 27339 + Cladonia grayi + Cladonia grayi Merr + species + http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg + + + + + 107463 + Xanthoria parietina + species + http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg + + + + + + + 147541 + Dothideomycetes + class + + + A class-wide phylogenetic assessment of Dothideomycetes + + + + 134362 + Capnodiales + order + + + + 41254 + Mycosphaerella + genus + + + + 83344 + Mycosphaerella fijiensis + species + + + + + 54734 + MYCGR + Mycosphaerella graminicola + Speckled leaf blotch fungus + Septoria tritici + species + + + + + 64363 + MYCPJ + Mycosphaerella pini + Red band needle blight disease fungus + Dothistroma septosporum + Dothistroma pini + species + + + + + 692275 + MPSXX + Mycosphaerella populorum SO2202 + Septoria musiva SO2202 + http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg + + + + + + 430998 + BCOXX + Baudoinia compniacensis + species + http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg + + + + + + 715340 + Pleosporineae + suborder + + + + 28556 + Pleosporaceae + family + + + Cochliobolus & Setosphaeria + + + 5015 + Cochliobolus + genus + + + + 5016 + COCHE + Cochliobolus heterostrophus + Drechslera maydis + species + + + + + 45130 + COCSA + Cochliobolus sativus + Bipolaris sorokiniana + species + http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg + + + + + + 93612 + SETTU + Setosphaeria turcica + (Luttr.) K.J. Leonard & Suggs, (1974) + Northern corn leaf blight disease fungus + Exserohilum turcicum + Helminthosporium turcicum + species + + + + + + 426418 + PYRTR + Pyrenophora tritici-repentis (strain Pt-1C-BFP) + Wheat tan spot fungus + Drechslera tritici-repentis + + + + + + 13684 + PHANO + Phaeosphaeria nodorum + Glume blotch fungus + Septoria nodorum + species + + + + + + + + 28568 + Trichocomaceae + family + + + + 5052 + Aspergillus + genus + + + + Aspergillus flavus + + + + 5059 + ASPFL + Aspergillus flavus + Link 1809 + Petromyces flavus + species + http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg + + + + + 332952 + ASPFN + Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) + Aspergillus flavus NRRL3357 + + + + + + 5061 + ASPNG + Aspergillus niger + species + + + + + Neosartorya & Emericella + + + 195546 + EMENI + Emericella nidulans + Vuill. 1927 + Aspergillus nidulans + species + + + + + 331117 + NEOFI + Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) + Aspergillus fischerianus + + + + + + + + 33183 + Onygenales + order + + + + 5501 + COCIM + Coccidioides immitis + Valley fever fungus + species + + + + + 336963 + UNCRE + Uncinocarpus reesii (strain UAMH 1704) + + + + + + + 656061 + TUBMM + Tuber melanosporum (strain Mel28) + Perigord black truffle + Tuber melanosporum Mel28 + http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg + + + + + + 4892 + Saccharomycetales + budding yeasts + order + + + Candida & Debaryomyces & Saccharomycetacea + + + 4893 + Saccharomycetaceae + family + + + Saccharomyces_Pichia + + Saccharomyces + + + 27288 + SACCA + Saccharomyces castellii + Yeast + Saccharomyces castellii + species + + + + + 4932 + YEAST + Saccharomyces cerevisiae + Baker's yeast + species + + + + + + 4905 + PICAN + Pichia angusta + Yeast + Hansenula polymorpha + species + + + + + Kluyveromyces & Ashbya + + Kluyveromyces + + + 28985 + KLULA + Kluyveromyces lactis + Yeast + Candida sphaerica + species + + + + + 4914 + KLUWA + Kluyveromyces waltii + Yeast + species + + + + + + 33169 + ASHGO + Ashbya gossypii + Yeast + Eremothecium gossypii + species + + + + + + Candida & Debaryomyces + + + 5475 + Candida + genus + + + + 5476 + CANAL + Candida albicans + Yeast + species + + + + + 5482 + CANTR + Candida tropicalis + Yeast + species + + + + + + 4959 + DEBHA + Debaryomyces hansenii + Yeast + Torulaspora hansenii + species + + + + + + + 4952 + YARLI + Yarrowia lipolytica + Candida lipolytica + species + + + + + + + 451866 + Taphrinomycotina + subphylum + + + Pneumocystidomycetes & Schizosaccharomycetes + + + 4895 + Schizosaccharomyces + genus + + + + 4897 + SCHJP + Schizosaccharomyces japonicus + Fission yeast + species + + + + + 4899 + SCHOT + Schizosaccharomyces octosporus + Fission yeast + species + http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG + + + + + 4896 + SCHPO + Schizosaccharomyces pombe + Fission yeast + species + + + + + + 4754 + PNECA + Pneumocystis carinii + species + + + + + + 5606 + Saitoella complicata + species + + + + + + + 5204 + Basidiomycota + phylum + + + Agaricomycotina & Ustilaginomycotina & Pucciniomycotina + + Agaricomycotina & Ustilaginomycotina + + + 5302 + Agaricomycotina + + + + 155619 + Homobasidiomycetes + class + + + Evolution of complex fruiting–body morphologies in homobasidiomycetes + + + Agaricomycetidae & Gloeophyllum & Aphyllophorales + + Agaricomycetidae & Gloeophyllum + + + 452333 + Agaricomycetidae + subclass + + + Agaricales & Boletales + + + 5338 + Agaricales + order + + + Agaricus & Coprinopsis & Laccaria & Pleurotus + + Agaricus & Coprinopsis & Laccaria + + Agaricus & Coprinopsis + + + 597362 + AGABU + Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392) + White button mushroom + Agaricus bisporus var. burnettii JB137-S8 + http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg + + + + + 5346 + COPCI + Coprinopsis cinerea + Inky cap fungus + Hormographiella aspergillata + species + http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg + + + + + + 29883 + LACBI + Laccaria bicolor + Bicoloured deceiver + Laccaria laccata var. bicolor + species + http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG + + + + + + 206324 + Gymnopus luxurians + species + http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg + + + + + + 5322 + PLEOS + Pleurotus ostreatus + Oyster mushroom + White-rot fungus + species + http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg + + + + + + 68889 + Boletales + Melanogastrales + Sclerodermatales + order + + + + 227334 + Coniophorineae + suborder + + + + 80637 + CPUXX + Coniophora puteana + Schum. ex Fries + cellar fungus + species + http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg + + + + + 578457 + SERL9 + Serpula lacrymans var. lacrymans (strain S7.9) + Dry rot fungus + http://www.anbg.gov.au/fungi/images/0160.jpg + + + + + + 388859 + Hydnomerulius pinastri + Spiny dry rot fungus + species + http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg + + + + + + + 202697 + Jaapia argillacea + species + http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg + + + + + + 104355 + GLOTR + Gloeophyllum trabeum + Brown rot fungus + species + http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg + + + + + + 5303 + Aphyllophorales + Gäum. (1926) + Shelf Fungi + Polyporales + order + + + + 83233 + Coriolaceae + family + + + The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes) + + + + + + + Postia & Fomitopsis & Wolfiporia & Trametes + + Antrodia clade + + Antrodia clade + + + + 40483 + FPIXX + Fomitopsis pinicola + (Swartz) P. Karsten + Red banded polypore + Fomes pinicola + Boletus pinicola + species + http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg + + + + + 104341 + PPLXX + Postia placenta + Rhodonia placenta + species + http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg + + + + + core polyporoid clade + + core polyporoid clade + + + + 5325 + TRAVE + Trametes versicolor + (L.) Lloyd 1921 + White-rot fungus + Coriolus versicolor + Bjerkandera versicolor + species + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg + + + + + 742152 + WOLCO + Wolfiporia cocos (strain MD-104) + Brown rot fungus + Wolfiporia cocos MD-104 SS10 + http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg + + + + + + + 42742 + CERSU + Ceriporiopsis subvermispora + species + + + + + + 732165 + DICSQ + Dichomitus squalens (strain LYAD-421) + Western red white-rot fungus + Dichomitus squalens LYAD-421 SS1 + http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg + + + + + + + 13563 + HETAN + Heterobasidion annosum + Root rot fungus + species + + + + + + 5215 + Tremellaceae + family + + + + 5207 + CRYNE + Cryptococcus neoformans + Filobasidiella neoformans + species + + + + + 1029985 + TREME + Tremella mesenterica + Pers. 1800 + Jelly fungus + Yellow Brain + Tremella lutescens + species + + + + + + + 452284 + Ustilaginomycotina + subphylum + + + + 425265 + MALGO + Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) + Dandruff-associated fungus + + + + + 5270 + USTMA + Ustilago maydis + Smut fungus + species + + + + + + + 29000 + Pucciniomycotina + subphylum + + + + 5258 + Pucciniales + rusts + order + + + + 156696 + MELLP + Melampsora laricis-populina + Kleb. 1902 + Melampsora larici-populina + Melampsora laricipopulina + species + + + + + 1029947 + PUCGR + Puccinia graminis + Pers. 1794 + Black stem rust fungus + Wheat rust + species + + + + + + 89013 + mitosporic Sporidiobolales + + + + 29898 + RHOGR + Rhodotorula graminis + Yeast + species + + + + + 40563 + SPORO + Sporobolomyces roseus + Kluyver & C. B. Niel 1924 + species + + + + + + + + 148960 + WALSE + Wallemia sebi + species + + + + + + + 451507 + Mucoromycotina + subphylum + + + + 34489 + Mucoraceae + family + + + + 36080 + MUCCI + Mucor circinelloides + Mucor griseo-roseus + species + + + + + 4837 + PHYBL + Phycomyces blakesleeanus + species + + + + + 64495 + RHIOR + Rhizopus oryzae + Rhizopus delemar + species + + + + + + 1069443 + MVNXX + Mortierella verticillata NRRL 6337 + species + http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg + http://www.diark.org/img/species_pict/Mortierella_verticillata + + + + + + + 61392 + Coemansia reversa + species + + + + + + 28583 + ALLMA + Allomyces macrogynus + species + + + + + + 4761 + Chytridiomycota + chytrids + Mastigomycotina + phylum + + + + 451435 + Chytridiomycetes + class + + + + 109871 + BATDE + Batrachochytrium dendrobatidis + Frog chytrid fungus + species + + + + + 109760 + SPIPN + Spizellomyces punctatus + species + + + + + + 1123529 + GONPR + Gonapodya prolifera + A. Fisch. 1892 + Aquatic fungus + species + http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg + + + + + + + 73868 + PIRSE + Piromyces sp. (strain E2) + species + http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg + + + + + + 6033 + Encephalitozoon + genus + + + + 6035 + ENCCU + Encephalitozoon cuniculi (strain GB-M1) + Microsporidian parasite + species + http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg + + + + + 907965 + ENCHA + Encephalitozoon hellem (strain ATCC 50504) + Microsporidian parasite + http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg + + + + + + Fonticula & Nucleariidae + + + + + 691883 + Fonticula alba + Fonticula alba Worley, Raper & Hohl. 1979 + species + + + + + 154970 + Nuclearia simplex + species + + + + + + + Amoebozoa + + 554915 + Amoebozoa + + + Dictyostelium + + 5782 + Dictyostelium + genus + + + + 44689 + DICDI + Dictyostelium discoideum + Slime mold + species + + + + + 5786 + DICPU + Dictyostelium purpureum + Slime mold + species + + + + + + 5759 + ENTHI + Entamoeba histolytica + species + + + + + + Bikonta + + + + Plants+HC+SAR megagroup + + Plants+HC + + Archaeplastida + + + 33090 + Viridiplantae + green plants + kingdom + + + + 3193 + Embryophyta + + + + 58023 + Tracheophyta + + + + 3398 + Magnoliophyta + flowering plants + Angiospermae + + + + 71240 + eudicotyledons + + + + 91827 + core eudicotyledons + + + + 71275 + rosids + subclass + + + fabids & malvids + + + 91835 + fabids + + + Rosales & Cucurbitales & Fabales + + Rosales & Cucurbitales + + + 3745 + Rosaceae + family + + + + 57918 + FRAVE + Fragaria vesca + Woodland strawberry + Fragaria vesca L. + European strawberry + alpine strawberry + species + http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg + http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg + + + + + 3760 + PRUPE + Prunus persica + Peach + Persica vulgaris + Amygdalus persica + species + http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg + + + + + + 3659 + CUCSA + Cucumis sativus + Cucumber + species + + + + + + 3814 + Papilionoideae + subfamily + + + + 3847 + SOYBN + Glycine max + cv. Wye + Soybean + Glycine hispida + species + + + + + 3880 + MEDTR + Medicago truncatula + Barrel medic + Medicago tribuloides + species + http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg + + + + + + + 3646 + Malpighiales + order + + + + 3977 + Euphorbiaceae + family + + + + 3983 + MANES + Manihot esculenta + Tapioca + Jatropha manihot + species + http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg + + + + + 3988 + RICCO + Ricinus communis + Castor bean + Ricinus sanguineus + species + http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg + + + + + + 3694 + POPTR + Populus trichocarpa + Western balsam poplar + Populus balsamifera subsp. trichocarpa + species + + + + + + + 91836 + malvids + + + Brassicales & Sapindales + + + 3699 + Brassicales + order + + + + 3700 + Brassicaceae + family + + + + 3701 + Arabidopsis + genus + + + + 59689 + ARALY + Arabidopsis lyrata + Lyre-leaved rock-cress + species + + + + + 3702 + ARATH + Arabidopsis thaliana + Mouse-ear cress + species + + + + + + 98038 + THEHA + Thellungiella halophila + Salt cress + species + http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg + + + + + + 3649 + CARPA + Carica papaya + Papaya + species + http://www.biopix.com/photos/jko-carica-papaya-00412.jpg + http://www.texasriviera.com/greenthumbs/papaya10.jpg + + + + + + 2706 + Citrus + genus + + + + 85681 + Citrus clementina + Citrus clementina hort. ex Tanaka + species + http://palmen-bolschetz.de/images/citrus%20clementine.jpg + + + + + 2711 + CITSI + Citrus sinensis + Sweet orange + Citrus x sinensis + Citrus aurantium var. sinensis + species + http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg + + + + + + + 71139 + EUCGR + Eucalyptus grandis + Flooded gum + species + http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg + + + + + + + 582304 + VITVI + Vitis vinifera + Grape + species + + + + + + 91888 + lamiids + + + + 4070 + Solanaceae + family + + + + 4107 + Solanum + genus + + + + 49274 + Lycopersicon + subgenus + + + + 4081 + SOLLC + Solanum lycopersicum + Tomato + Lycopersicon esculentum + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg + + + + + 4084 + SOLPI + Solanum pimpinellifolium + Currant tomato + Lycopersicon pimpinellifolium + species + http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg + + + + + + 4113 + SOLTU + Solanum tuberosum + Potato + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg + + + + + + 4097 + TOBAC + Nicotiana tabacum + Common tobacco + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg + + + + + + 4155 + MIMGU + Mimulus guttatus + Yellow monkey flower + Yellow monkey flower + species + + + + + + + 218851 + AQUCA + Aquilegia caerulea + E.James + Rocky mountain columbine + Aquilegia coerulea + species + http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG + + + + + + 4447 + Liliopsida + monocots + Monocotyledoneae + class + + + + 4479 + Poaceae + grass family + Gramineae + family + + + + 147369 + Panicoideae + Link, 1827 + Centothecoideae + subfamily + + + + 147429 + Andropogoneae + Dumort., 1824 + tribe + + + + 4558 + SORBI + Sorghum bicolor + Sorghum + Sorghum vulgare + species + + + + + 4577 + MAIZE + Zea mays + Maize + species + + + + + + 147428 + Paniceae + tribe + + + + 38727 + Panicum virgatum + switchgrass + species + http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg + + + + + 4555 + SETIT + Setaria italica + Foxtail millet + Panicum italicum + species + http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg + + + + + + + 359160 + BEP clade + + + + 4527 + Oryza + genus + + + + 4530 + ORYSA + Oryza sativa + Rice + species + + + + + 39947 + ORYSJ + Oryza sativa subsp. japonica + Rice + + + + + + 15368 + BRADI + Brachypodium distachyon + Purple false brome + Trachynia distachya + species + http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg + + + + + + + 4641 + MUSAC + Musa acuminata + Banana + Musa cavendishii + species + http://upload.wikimedia.org/wikipedia/commons/f/fd/Musa_acuminata1.jpg + + + + + + + 34167 + SELMO + Selaginella mollis + Moss + species + + + + + + 145481 + PHYPA + Physcomitrella patens subsp. patens + Moss + subspecies + + + + + + 3041 + Chlorophyta + phylum + + + + 13792 + Mamiellales + order + + + + 70447 + Ostreococcus + genus + + + + 436017 + OSTLU + Ostreococcus lucimarinus (strain CCE9901) + + + + + 385169 + Ostreococcus sp. RCC809 + species + + + + + 70448 + OSTTA + Ostreococcus tauri + species + + + + + + 38832 + Micromonas + genus + + + + 564608 + MICPC + Micromonas pusilla (strain CCMP1545) + Picoplanktonic green alga + + + + + 296587 + MICSR + Micromonas sp. (strain RCC299 / NOUM17) + Picoplanktonic green alga + Micromonas sp. RCC299 + species + + + + + + Trebouxiophyceae & Chlorophyceae + + + 75966 + Trebouxiophyceae + class + + + + 763042 + Asterochloris sp. Cgr/DA1pho + species + http://genome.jgi-psf.org/Astpho1/Figure_3.jpg + + + + + 554065 + Chlorella variabilis + Chlorella sp. NC64A + species + + + + + 574566 + Coccomyxa sp. 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