From 32ccffc95209f230faacf6f27394669c0dc8b271 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 30 Nov 2005 15:37:59 +0000
Subject: [PATCH] Parse id before url completion

---
 src/jalview/gui/IdPanel.java   |    3 +++
 src/jalview/gui/PopupMenu.java |    2 +-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index 2d9c4f3..8ff3df2 100755
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -164,6 +164,9 @@ public class IdPanel extends JPanel implements MouseListener,
       //DEFAULT LINK IS FIRST IN THE LINK LIST
       int seq = av.getIndex(y);
       String id = av.getAlignment().getSequenceAt(seq).getName();
+      if (id.indexOf("|") > -1)
+        id = id.substring(id.lastIndexOf("|") + 1);
+
 
       String url = links.elementAt(0).toString();
       url = url.substring(url.indexOf("|")+1);
diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index 7413150..f9e0d19 100755
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -227,7 +227,7 @@ public class PopupMenu extends JPopupMenu
               id = id.substring(id.lastIndexOf("|")+1);
 
             final String url = link.substring(link.indexOf("|")+1, link.indexOf("$SEQUENCE_ID$"))
-                + sequence.getName() +
+                + id +
                 link.substring(link.indexOf("$SEQUENCE_ID$") + 13);
 
 
-- 
1.7.10.2