From 3440eae5b69bdca30f480f9e0d4f0df226630ef9 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 18 Jan 2018 14:54:49 +0000
Subject: [PATCH] JAL-2679 update query id to actual case of retrieved gene

---
 src/jalview/ext/ensembl/EnsemblGene.java |    2 ++
 1 file changed, 2 insertions(+)

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index c8b59da..0d5fc26 100644
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -152,6 +152,8 @@ public class EnsemblGene extends EnsemblSeqProxy
       }
       if (geneAlignment.getHeight() == 1)
       {
+        // ensure id has 'correct' case for the Ensembl identifier
+        geneId = geneAlignment.getSequenceAt(0).getName();
         getTranscripts(geneAlignment, geneId);
       }
       if (al == null)
-- 
1.7.10.2