From 3491e0d3c56167d6f6e8f291572e40367efd7fca Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Sat, 25 May 2013 04:44:21 +0000 Subject: [PATCH] inprogress --- forester/java/src/org/forester/surfacing/SurfacingUtil.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/forester/java/src/org/forester/surfacing/SurfacingUtil.java b/forester/java/src/org/forester/surfacing/SurfacingUtil.java index cc0cd46..abcd31f 100644 --- a/forester/java/src/org/forester/surfacing/SurfacingUtil.java +++ b/forester/java/src/org/forester/surfacing/SurfacingUtil.java @@ -175,7 +175,7 @@ public final class SurfacingUtil { final Set da = new HashSet(); domain_architecutures.put( genome, da ); for( final Protein protein : protein_list ) { - final String da_str = ( ( BasicProtein ) protein ).toDomainArchitectureString( "~" ); + final String da_str = ( ( BasicProtein ) protein ).toDomainArchitectureString( "~", 3, "=" ); if ( !da.contains( da_str ) ) { if ( !distinct_domain_architecuture_counts.containsKey( da_str ) ) { distinct_domain_architecuture_counts.put( da_str, 1 ); -- 1.7.10.2