From 378db7e2823248bd4c97af6683006cabec8b390e Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 29 Aug 2012 17:54:26 +0100
Subject: [PATCH] JAL-974 skip empty rows

---
 src/jalview/ws/jws2/AADisorderClient.java |    5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/src/jalview/ws/jws2/AADisorderClient.java b/src/jalview/ws/jws2/AADisorderClient.java
index c5d0bc0..8a6e9cc 100644
--- a/src/jalview/ws/jws2/AADisorderClient.java
+++ b/src/jalview/ws/jws2/AADisorderClient.java
@@ -187,7 +187,10 @@ public class AADisorderClient extends JabawsAlignCalcWorker implements
           }
           else
           {
-
+            if (scr.getScores().size()==0)
+            {
+              continue;
+            }
             AlignmentAnnotation annot = createAnnotationRowsForScores(
                     ourAnnot, service.serviceType + " (" + scr.getMethod()
                             + ")", service.getServiceTypeURI()+"/"+ scr.getMethod(), aseq,
-- 
1.7.10.2