From 378fa84753a8ba8ac9e973db5717926d51c71fe3 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 27 Oct 2006 17:01:37 +0000
Subject: [PATCH] Remove consensus annotation if out of memory

---
 src/jalview/gui/AlignViewport.java |    3 +++
 1 file changed, 3 insertions(+)

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 36f69a5..0519569 100755
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -497,6 +497,8 @@ public class AlignViewport
         }
         catch (OutOfMemoryError error)
         {
+          alignment.deleteAnnotation(consensus);
+
           consensus = null;
           hconsensus = null;
           javax.swing.SwingUtilities.invokeLater(new Runnable()
@@ -543,6 +545,7 @@ public class AlignViewport
             seqs.append(consensus.annotations[i].displayCharacter);
         }
       }
+
       SequenceI sq = new Sequence("Consensus", seqs.toString());
       sq.setDescription("Percentage Identity Consensus "+((ignoreGapsInConsensusCalculation) ? " without gaps" : ""));
       return sq;
-- 
1.7.10.2