From 37ccad699d3f506184538702799df55866211528 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Thu, 23 Jun 2016 14:12:09 +0100 Subject: [PATCH] JAL-2110 warning message when routine finds non-ds sequences in the dataset (seems to happen with alignments returned from Ensembl sequence fetcher) --- src/jalview/analysis/CrossRef.java | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java index 2c5393d..1cd6a3d 100644 --- a/src/jalview/analysis/CrossRef.java +++ b/src/jalview/analysis/CrossRef.java @@ -801,7 +801,11 @@ public class CrossRef if (nxt.getDatasetSequence() != null) { System.err - .println("Implementation warning: getProducts passed a dataset alignment without dataset sequences in it!"); + .println("Implementation warning: CrossRef initialised with a dataset alignment with non-dataset sequences in it! (" + + nxt.getDisplayId(true) + + " has ds reference " + + nxt.getDatasetSequence().getDisplayId(true) + + ")"); } if (nxt == sequenceI || nxt == sequenceI.getDatasetSequence()) { -- 1.7.10.2