From 380af9302bdfc6647025857ebfd87453d7fb8dd0 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Wed, 14 Jan 2015 16:35:41 +0000
Subject: [PATCH] JAL-1619 modified repaint after 'Align As' action

---
 src/jalview/gui/AlignFrame.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 7a36754..8ff9eda 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -797,7 +797,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
           seqCount += seqsAligned;
           if (seqsAligned > 0)
           {
-            af.viewport.alignmentChanged(af.alignPanel);
+            af.alignPanel.alignmentChanged();
             alignCount++;
           }
         }
-- 
1.7.10.2