From 38232d536c3daa490c6ddec9e2d775f17eac587d Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Fri, 18 Oct 2013 02:55:44 +0000 Subject: [PATCH] more species added --- forester/data/{tol_150.xml => tol_151.xml} | 1504 +++++++++++++++++----------- 1 file changed, 913 insertions(+), 591 deletions(-) rename forester/data/{tol_150.xml => tol_151.xml} (86%) diff --git a/forester/data/tol_150.xml b/forester/data/tol_151.xml similarity index 86% rename from forester/data/tol_150.xml rename to forester/data/tol_151.xml index 8b7eeef..0284e8d 100644 --- a/forester/data/tol_150.xml +++ b/forester/data/tol_151.xml @@ -345,13 +345,15 @@ order - Ctenohystrica & Mouse-related clade + Hystricomorpha & Sciurognathi Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades. - Mouse-related clade + 33553 + Sciurognathi + suborder @@ -392,7 +394,7 @@ Mesocricetus auratus Golden hamster species - http://www.dicts.info/img/ud/syrian_hamster.jpg + http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG/800px-Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG @@ -409,13 +411,30 @@ - 10141 - CAVPO - Cavia porcellus - Guinea pig - species - http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg + 33550 + Hystricognathi + suborder + + + 10141 + CAVPO + Cavia porcellus + Guinea pig + species + http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg + + + + + 10181 + HETGA + Heterocephalus glaber + Naked mole rat + species + http://calphotos.berkeley.edu/imgs/512x768/9092_3191/3555/0080.jpeg + + @@ -434,7 +453,6 @@ 9975 Lagomorpha - Rabbits, hares, pikas order @@ -1240,133 +1258,150 @@ Panarthropoda + Onychophora & Arthropoda - 6656 - Arthropoda - phylum - - A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata + + MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda - 197563 - Mandibulata + 6656 + Arthropoda + phylum - - Arthropod fossil data increase congruence of morphological and molecular phylogenies - - + + A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata - 197562 - Pancrustacea + 197563 + Mandibulata + + Arthropod fossil data increase congruence of morphological and molecular phylogenies + + + - 6960 - Hexapoda - superclass + 197562 + Pancrustacea - 50557 - Insecta - true insects - class + 6960 + Hexapoda + superclass - 33340 - Neoptera - subclass + 50557 + Insecta + true insects + class - 33392 - Endopterygota - infraclass + 33340 + Neoptera + subclass - Hymenoptera & Lepidoptera & Diptera + + 33392 + Endopterygota + infraclass + - Lepidoptera & Diptera + Hymenoptera & Lepidoptera & Diptera - - 7147 - Diptera - order - + Lepidoptera & Diptera - 7215 - Drosophila - fruit flies - genus + 7147 + Diptera + order - - The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research - - 32341 - Sophophora - subgenus + 7215 + Drosophila + fruit flies + genus + + The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research + - melanogaster & pseudoobscura subgroups + + 32341 + Sophophora + subgenus + - - 32346 - melanogaster group - + melanogaster & pseudoobscura subgroups - 32351 - melanogaster subgroup + 32346 + melanogaster group - DROSE & DROSI & DROME & DROYA + + 32351 + melanogaster subgroup + - DROSE & DROSI & DROME + DROSE & DROSI & DROME & DROYA - DROSE & DROSI + DROSE & DROSI & DROME - - 7238 - DROSE - Drosophila sechellia - Fruit fly - species - + DROSE & DROSI + + + 7238 + DROSE + Drosophila sechellia + Fruit fly + species + + + + + 7240 + DROSI + Drosophila simulans + Fruit fly + species + + - 7240 - DROSI - Drosophila simulans + 7227 + DROME + Drosophila melanogaster Fruit fly species + http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg - 7227 - DROME - Drosophila melanogaster + 7245 + DROYA + Drosophila yakuba Fruit fly species - http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg - 7245 - DROYA - Drosophila yakuba + 7220 + DROER + Drosophila erecta Fruit fly species @@ -1374,9 +1409,9 @@ - 7220 - DROER - Drosophila erecta + 7217 + DROAN + Drosophila ananassae Fruit fly species @@ -1384,452 +1419,526 @@ - 7217 - DROAN - Drosophila ananassae - Fruit fly - species + 32358 + pseudoobscura subgroup + + + 7234 + DROPE + Drosophila persimilis + Fruit fly + species + + + + + 46245 + DROPS + Drosophila pseudoobscura pseudoobscura + Fruit fly + subspecies + http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg + + - 32358 - pseudoobscura subgroup + 7260 + DROWI + Drosophila willistoni + Fruit fly + species + + + + Drosophila subgenus & Hawaiian Drosophila + + Drosophila subgenus - 7234 - DROPE - Drosophila persimilis + 7230 + DROMO + Drosophila mojavensis Fruit fly species - 46245 - DROPS - Drosophila pseudoobscura pseudoobscura + 7244 + DROVI + Drosophila virilis Fruit fly - subspecies - http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg + species + + + 7222 + DROGR + Drosophila grimshawi + Fruit fly + Idiomyia grimshawi + species + http://www.pacificislandbooks.com/fruitf~1.jpg + + + + + + 7157 + Culicidae + mosquitos + family + - 7260 - DROWI - Drosophila willistoni - Fruit fly + 7159 + AEDAE + Aedes aegypti + Yellowfever mosquito + Culex aegypti species + http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg - - - Drosophila subgenus & Hawaiian Drosophila - Drosophila subgenus - - - 7230 - DROMO - Drosophila mojavensis - Fruit fly - species - - - - - 7244 - DROVI - Drosophila virilis - Fruit fly - species - - + + 7165 + ANOGA + Anopheles gambiae + African malaria mosquito + species + http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg + - 7222 - DROGR - Drosophila grimshawi - Fruit fly - Idiomyia grimshawi + 7175 + CULPI + Culex pipiens + House mosquito species - http://www.pacificislandbooks.com/fruitf~1.jpg + http://upload.wikimedia.org/wikipedia/commons/3/35/Culex_pipiens_2007-1.jpg - 7157 - Culicidae - mosquitos - family + 104431 + Obtectomera - 7159 - AEDAE - Aedes aegypti - Yellowfever mosquito - Culex aegypti + 7091 + BOMMO + Bombyx mori + Silk moth species - http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg + http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg - 7165 - ANOGA - Anopheles gambiae - African malaria mosquito + 13037 + DANPL + Danaus plexippus + Monarch butterfly species - http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg - - - - - 7175 - CULPI - Culex pipiens - House mosquito - species - http://upload.wikimedia.org/wikipedia/commons/3/35/Culex_pipiens_2007-1.jpg + http://bugguide.net/images/cache/7QFRQQYRJKQ0X0YQM0Z02000U0ORKQR090H07QBRFKNRQQH0P0YRE0YRZQARLQWR70JQG09RYKDQJKCQFKFQJKTQI0.jpg + http://bugguide.net/images/raw/7RTZXR3Z6RRHKZHH8RVL8RRHMZKHERKHQZLHGRLHPR1LERQH4RCZYL1LGRHH7ZZHER1LGRSH7R6L.jpg - 7091 - BOMMO - Bombyx mori - Silk moth - species - http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg - - - - - - 7400 - Apocrita - wasps, ants and bees - - - - 7434 - Aculeata - suborder + 7400 + Apocrita + wasps, ants and bees - 7460 - APIME - Apis mellifera - Honeybee - species - http://www.floridanature.org/photos/Apis_mellifera_6b_&_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg + 7434 + Aculeata + suborder + + + 36668 + Formicidae + ants + family + + + + 143999 + Attini + tribe + + + + 12957 + ATTCE + Atta cephalotes + Linnaeus, 1758 + Leafcutter ant + species + http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg + + + + + 103372 + ACREC + Acromyrmex echinatior + Forel, 1899 + Panamanian leafcutter ant + Acromyrmex octospinosus echinatior + species + http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg + + + + + + 104421 + CAMFO + Camponotus floridanus + Buckley, 1866 + Florida carpenter ant + species + http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg + + + + + + 7460 + APIME + Apis mellifera + Honeybee + species + http://www.floridanature.org/photos/Apis_mellifera_6b_&_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg + + - 12957 - ATTCE - Atta cephalotes - Linnaeus, 1758 - Leafcutter ant + 7425 + NASVI + Nasonia vitripennis + Parasitic wasp species - http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg + http://www.freshpond.org/nasonia.jpg - - - 7425 - NASVI - Nasonia vitripennis - Parasitic wasp - species - http://www.freshpond.org/nasonia.jpg - - + + + + 7070 + TRICA + Tribolium castaneum + Red flour beetle + species + http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg + - 7070 - TRICA - Tribolium castaneum - Red flour beetle - species - http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg - - - - - - 33342 - Paraneoptera - infraclass - - - - 7524 - Hemiptera - order + 33342 + Paraneoptera + infraclass - 7029 - ACYPI - Acyrthosiphon pisum - Pea aphid - species - http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg + 7524 + Hemiptera + order + + + 7029 + ACYPI + Acyrthosiphon pisum + Pea aphid + species + http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg + + + + + 13249 + RHOPR + Rhodnius prolixus + Triatomid bug + species + http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg + + - 13249 - RHOPR - Rhodnius prolixus - Triatomid bug - species - http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg + 121224 + PEDHC + Pediculus humanus subsp. corporis + Body louse + subspecies + http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg - - - 121224 - PEDHC - Pediculus humanus subsp. corporis - Body louse - subspecies - http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg - - + + + + 568273 + Machilis germanica + species + http://www.naturefg.com/images/c-animals/machilis.jpg + - 568273 - Machilis germanica + 383857 + Campodea fragilis species - http://www.naturefg.com/images/c-animals/machilis.jpg + http://images.wikia.com/insect/images/3/3c/Campodea_fragilis.jpg - 383857 - Campodea fragilis - species - http://images.wikia.com/insect/images/3/3c/Campodea_fragilis.jpg + 6657 + Crustacea + subphylum + + + 6658 + Branchiopoda + class + + + + 6661 + ARTSF + Artemia franciscana + Brine shrimp + Artemia sanfranciscana + species + http://www.aslo.org/photopost/data/518/medium/8Brine_shrimp.jpg + + + + + 6669 + DAPPU + Daphnia pulex + Water flea + species + http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg + + + + + + 6706 + HOMAM + Homarus americanus + American lobster + http://upload.wikimedia.org/wikipedia/commons/5/5e/Lobster.jpg + + - 6657 - Crustacea + 61985 + Myriapoda subphylum - 6658 - Branchiopoda + 7553 + Diplopoda + millipedes class - 6661 - ARTSF - Artemia franciscana - Brine shrimp - Artemia sanfranciscana - species - http://www.aslo.org/photopost/data/518/medium/8Brine_shrimp.jpg + 118561 + Helminthomorpha + subclass + + + 364406 + ANTGC + Antrokoreana gracilipes + Troglobite millipede + species + + + + + 174156 + NARAN + Narceus annularis + Millipede + species + http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg + + - 6669 - DAPPU - Daphnia pulex - Water flea + 52428 + Polyxenus lagurus + bristly millipede species - http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg + http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg - 6706 - HOMAM - Homarus americanus - American lobster - http://upload.wikimedia.org/wikipedia/commons/5/5e/Lobster.jpg - - - - - - - 61985 - Myriapoda - subphylum - - - - 7553 - Diplopoda - millipedes - class - - - - 118561 - Helminthomorpha - subclass + 7540 + Chilopoda + centipedes + class - 364406 - ANTGC - Antrokoreana gracilipes - Troglobite millipede + 29022 + SCUCO + Scutigera coleoptrata + House centipede species - http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg + http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG - 174156 - NARAN - Narceus annularis - Millipede + 126957 + STRMM + Strigamia maritima + European centipede + Geophilus maritimus species - http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg + http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg - - - 52428 - Polyxenus lagurus - bristly millipede - species - http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg - - - - - - 7540 - Chilopoda - centipedes - class - - - - 29022 - SCUCO - Scutigera coleoptrata - House centipede - species - http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG - - - - - 126957 - STRMM - Strigamia maritima - European centipede - Geophilus maritimus - species - http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg - - - - - - 6843 - Chelicerata - subphylum - - - A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator) - - - - - - - - Arachnida & Merostomata - Sea spider + 6843 + Chelicerata + subphylum + + A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator) + + + + + + + + Arachnida & Merostomata - 6854 - Arachnida - class + Sea spider - 6945 - IXOSC - Ixodes scapularis - Black-legged tick - Deer tick - species - http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg + 6854 + Arachnida + class + + + 6933 + Acari + mites & ticks + subclass + + + + 6945 + IXOSC + Ixodes scapularis + Black-legged tick + Deer tick + species + http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg + + + + + 32264 + TETUR + Tetranychus urticae + Two-spotted spider mite + species + http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Tetranychus-urticae.jpg/472px-Tetranychus-urticae.jpg + + + + + + 34649 + MESMA + Mesobuthus martensii + Karsch, 1879 + Manchurian scorpion + Buthus martensi + Buthus martensii + species + http://www.ntnu.no/ub/scorpion-files/m_martensii1.jpg + + - 34649 - MESMA - Mesobuthus martensii - Karsch, 1879 - Manchurian scorpion - Buthus martensi + 6850 + LIMPO + Limulus polyphemus + Atlantic horseshoe crab species - http://www.ntnu.no/ub/scorpion-files/m_martensii1.jpg + http://www.biopix.eu/photosmedium/Limulus%20polyphemus%2000008.JPG - 6850 - LIMPO - Limulus polyphemus - Atlantic horseshoe crab + 258330 + Ammothea hilgendorfi species - http://www.biopix.eu/photosmedium/Limulus%20polyphemus%2000008.JPG + http://nathistoc.bio.uci.edu/Pycnogonida/DSCF0073b.jpg - - - 258330 - Ammothea hilgendorfi - species - http://nathistoc.bio.uci.edu/Pycnogonida/DSCF0073b.jpg - - + + + + 488523 + Euperipatoides kanangrensis + Reid, 1996 + species + http://content60.eol.org/content/2012/04/05/01/26600_580_360.jpg + http://upload.wikimedia.org/wikipedia/commons/6/67/Euperipatoides_kanangrensis_crop.jpg + @@ -1846,98 +1955,132 @@ - 119089 - Chromadorea - class + 6231 + Nematoda + roundworms + phylum - - - nematode Clade V + + 119089 + Chromadorea + class + + + - - 6237 - Caenorhabditis - genus - - - Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss - + nematode Clade V - CAEBR & CAERE & CAEBE & CAEEL + + 6237 + Caenorhabditis + genus + + + Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss + - CAEBR & CAERE & CAEBE + CAEBR & CAERE & CAEBE & CAEEL - CAEBR & CAERE + CAEBR & CAERE & CAEBE - - 6238 - CAEBR - Caenorhabditis briggsae - species - http://www.life.umd.edu/biology/haag/briggsae_herm.jpg - + CAEBR & CAERE + + + 6238 + CAEBR + Caenorhabditis briggsae + species + http://www.life.umd.edu/biology/haag/briggsae_herm.jpg + + + + + 31234 + CAERE + Caenorhabditis remanei + Caenorhabditis vulgaris + species + http://lemur.amu.edu.pl/share/php/mirnest_1.0/species_images/Caenorhabditis_remanei.jpg + + - 31234 - CAERE - Caenorhabditis remanei - Caenorhabditis vulgaris + 135651 + CAEBE + Caenorhabditis brenneri + Nematode worm + Caenorhabditis CB5161 species - http://lemur.amu.edu.pl/share/php/mirnest/species_images/Caenorhabditis_remanei.jpg - 135651 - CAEBE - Caenorhabditis brenneri - Nematode worm - Caenorhabditis CB5161 + 6239 + CAEEL + Caenorhabditis elegans species + http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif - 6239 - CAEEL - Caenorhabditis elegans + 281687 + CAEJA + Caenorhabditis japonica species - http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif - 281687 - CAEJA - Caenorhabditis japonica + 54126 + PRIPA + Pristionchus pacificus + Parasitic nematode species + http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg - 54126 - PRIPA - Pristionchus pacificus - Parasitic nematode - species - http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg + 6296 + Onchocercidae + family + + + 6279 + BRUMA + Brugia malayi + Filarial nematode worm + species + http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG + + + + + 6293 + WUCBA + Wuchereria bancrofti + species + http://upload.wikimedia.org/wikipedia/commons/a/a9/Wuchereria_bancrofti_1_DPDX.JPG + + - 6279 - BRUMA - Brugia malayi - Filarial nematode worm + 6334 + TRISP + Trichinella spiralis + Trichina worm species - http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG + http://upload.wikimedia.org/wikipedia/commons/e/e8/Trichinella_larv1_DPDx.JPG @@ -2052,13 +2195,30 @@ - 6183 - SCHMA - Schistosoma mansoni - Blood fluke - species - http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg + 6178 + Trematoda + class + + + 6183 + SCHMA + Schistosoma mansoni + Blood fluke + species + http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg + + + + + 79923 + CLOSI + Clonorchis sinensi + Cobbold, 1875 + Chinese liver fluke + http://people.bethel.edu/~kisrob/VirtualBiology/Planaria/Chlonorchis_sinensis.jpg + + @@ -2256,6 +2416,9 @@ Fungi kingdom + + Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota & Neocallimastigomycota @@ -2709,7 +2872,7 @@ Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) Aspergillus flavus NRRL3357 strain - http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg + http://www.jhunewsletter.com/wp-content/uploads/2012/11/b8fungi.jpeg @@ -3226,9 +3389,7 @@ Coriolus versicolor Bjerkandera versicolor species - http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg - http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg - http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0304/0521.jpeg @@ -3533,6 +3694,9 @@ Microsporidia phylum + + Disseminated Infection Caused by Novel Species of Microsporidium, Thailand + 6032 @@ -3567,13 +3731,25 @@ - - 993615 - VITCO - Vittaforma corneae (strain ATCC 50505) - Microsporidian parasite - Nosema corneum - + Nosematidae & Enterocytozoonidae + + + 993615 + VITCO + Vittaforma corneae (strain ATCC 50505) + Microsporidian parasite + Nosema corneum + + + + + 481877 + ENTBH + Enterocytozoon bieneusi (strain H348) + Microsporidian parasite + http://www.biolib.cz/IMG/GAL/17310.jpg + + @@ -3585,6 +3761,15 @@ species + + + 1003232 + EDHAE + Edhazardia aedis (strain USNM 41457) + Microsporidian parasite + http://wwx.inhs.illinois.edu/files/6813/4021/9153/4Edhazardia_aedis.jpg + + @@ -3610,7 +3795,6 @@ - Amoebozoa 554915 Amoebozoa @@ -3623,29 +3807,47 @@ order - Dictyostelium 5782 Dictyostelium genus + + An expanded phylogeny of social amoebas (Dictyostelia) shows increasing diversity and new morphological patterns + + + + + - - 44689 - DICDI - Dictyostelium discoideum - Slime mold - species - http://www.tins.ne.jp/~tsukubagec/csm.GIF - + group 4 + + + 44689 + DICDI + Dictyostelium discoideum + Slime mold + species + http://www.tins.ne.jp/~tsukubagec/csm.GIF + + + + + 5786 + DICPU + Dictyostelium purpureum + Slime mold + species + + - 5786 - DICPU - Dictyostelium purpureum + 1054147 + DICFS + Dictyostelium fasciculatum (strain SH3) Slime mold - species + strain @@ -3662,11 +3864,26 @@ - 5759 - ENTHI - Entamoeba histolytica - species + 5758 + Entamoeba + genus + + + 5759 + ENTHI + Entamoeba histolytica + species + http://www.dpd.cdc.gov/dpdx/images/ParasiteImages/A-F/Amebiasis/E_histo/Ehistdisp_troph_wtmt2.jpg + + + + + 370354 + ENTDS + Entamoeba dispar (strain ATCC PRA-260 / SAW760) + + @@ -3939,7 +4156,7 @@ Citrus clementina Citrus clementina hort. ex Tanaka species - http://palmen-bolschetz.de/images/citrus%20clementine.jpg + http://www.citrusgenomedb.org/sites/default/files/tripal/tripal_organism/images/Citrus_clementina.jpg @@ -4182,14 +4399,31 @@ - 15368 - BRADI - Brachypodium distachyon - Purple false brome - Trachynia distachya - species - http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg + 147368 + Pooideae + subfamily + + + 15368 + BRADI + Brachypodium distachyon + Purple false brome + Trachynia distachya + species + http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg + + + + + 112509 + HORVD + Hordeum vulgare var. distichum + Two-rowed barley + subspecies + http://www.missouriplants.com/Grasses/Hordeum_vulgare_plant.jpg + + @@ -4367,6 +4601,7 @@ Chlamydomonas reinhardtii Chlamydomonas smithii species + http://genome.jgi-psf.org/Chlre3/chlamy_BG.gif @@ -4764,166 +4999,253 @@ Patterson 1989, emend. Adl et al. 2005 Chromophyta heterokonts + Heterokontophyta - Pelagophyceae & Bacillariophyta & Oomycetes - - Seven Gene Phylogeny of Heterokonts - - - + Labyrinthulomycetes & Ochrophyta & Oomycetes + + + + - Pelagophyceae & Bacillariophyta + Ochrophyta & Oomycetes + + Seven Gene Phylogeny of Heterokonts + + + - 2836 - Bacillariophyta - diatoms - phylum + Ochrophyta - 33850 - Bacillariophycidae + 2836 + Bacillariophyta + diatoms + class - 186039 - FCYXX - Fragilariopsis cylindrus - Krieger - Nitzschia cylindrus - species - http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg + 33850 + Bacillariophycidae + + + 186039 + FCYXX + Fragilariopsis cylindrus + Krieger + Nitzschia cylindrus + species + http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg + + + + + 2850 + PHATR + Phaeodactylum tricornutum + Bohlin + species + http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png + + - 2850 - PHATR - Phaeodactylum tricornutum - Bohlin - species - http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png + 35127 + Thalassiosira + genus + + + 35128 + THAPS + Thalassiosira pseudonana + Hasle & Heimdal + Marine diatom + Cyclotella nana + species + http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg + + + + + 159749 + THAOC + Thalassiosira oceanica + Marine diatom + species + + + Pelagophyceae & Phaeophyceae - 35128 - THAPS - Thalassiosira pseudonana - Hasle & Heimdal - Marine diatom - Cyclotella nana - species - http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg + + Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean + + + + + + 44056 + AURAN + Aureococcus anophagefferens + Hargraves & Sieburth + Harmful bloom alga + species + http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg + + + + + 2880 + ECTSI + Ectocarpus siliculosus + Brown alga + species + http://www.research.kobe-u.ac.jp/rcis-ku-macc/j.p.folder/photo/KU-1110%20Ectocarpus%20siliculosus%20b%20x20.jpg + + - 44056 - AURAN - Aureococcus anophagefferens - Hargraves & Sieburth - Harmful bloom alga - species - http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg + 4762 + Oomycetes + + + 4776 + Peronosporales + order + + + + 4783 + Phytophthora + genus + + + + 4787 + PHYIN + Phytophthora infestans + (Mont.) de Bary 1876 + Potato late blight fungus + species + http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg + + + + + 164328 + PHYRM + Phytophthora ramorum + Sudden oak death agent + species + http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg + + + + + 67593 + PHYSO + Phytophthora sojae + Soybean stem and root rot agent + Phytophthora megasperma f. sp. glycines + species + http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg + + + + + 4785 + PHYCI + Phytophthora cinnamomi + Cinnamon fungus + species + http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg + + + + + 4784 + PHYCP + Phytophthora capsici + species + http://upload.wikimedia.org/wikipedia/commons/2/24/Phytophthora_capsici_sporangia.jpg + + + + + + 559515 + HYAAE + Hyaloperonospora arabidopsidis (strain Emoy2) + Downy mildew agent + Peronospora arabidopsidis + http://www.nature.com/nature/journal/v470/n7332/images/470044a-f1.2.jpg + + + + + + 65071 + PYTUL + Pythium ultimum + species + http://www.plantpath.cornell.edu/labs/enelson/images/Germ_Sporangia(small).jpg + + - 4783 - Phytophthora - genus + 33674 + Thraustochytriaceae + Thraustochytriales + family - 4787 - PHYIN - Phytophthora infestans - (Mont.) de Bary 1876 - Potato late blight fungus - species - http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg - - - - - 164328 - PHYRM - Phytophthora ramorum - Sudden oak death agent - species - http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg - - - - - 67593 - PHYSO - Phytophthora sojae - Soybean stem and root rot agent - Phytophthora megasperma f. sp. glycines - species - http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg + 702273 + AKEXX + Aplanochytrium kerguelense PBS07 + http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg - 4785 - PHYCI - Phytophthora cinnamomi - Cinnamon fungus - species - http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg + 876976 + SAGXX + Schizochytrium aggregatum ATCC 28209 + http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG - 4784 - PHYCP - Phytophthora capsic + 87102 + ALIXX + Aurantiochytrium limacinum + Schizochytrium limacinum species + http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg - 33674 - Thraustochytriaceae - Thraustochytriales - family + 12968 + BLAHO + Blastocystis hominis + species - - - 702273 - AKEXX - Aplanochytrium kerguelense PBS07 - http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg - - - - - 876976 - SAGXX - Schizochytrium aggregatum ATCC 28209 - http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG - - - - - 87102 - ALIXX - Aurantiochytrium limacinum - Schizochytrium limacinum - species - http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg - - -- 1.7.10.2