From 389a50f7b2f71096a98b54366683d520ecbf8193 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Fri, 11 Apr 2008 12:28:17 +0000
Subject: [PATCH] fix JPred thread so job aborts if submission fails.

---
 src/jalview/ws/JPredThread.java |    3 +++
 1 file changed, 3 insertions(+)

diff --git a/src/jalview/ws/JPredThread.java b/src/jalview/ws/JPredThread.java
index ba114f2..106bb53 100644
--- a/src/jalview/ws/JPredThread.java
+++ b/src/jalview/ws/JPredThread.java
@@ -413,6 +413,7 @@ class JPredThread
           job.result = (vamsas.objects.simple.Result)new JpredResult();
           job.result.setInvalid(true);
           job.result.setStatus("Submission " + job.jobId);
+          throw new Exception(job.jobId); 
         }
         else
         {
@@ -428,6 +429,8 @@ class JPredThread
     }
     catch (Exception e)
     {
+      // kill the whole job.
+      wsInfo.setStatus(WebserviceInfo.STATE_STOPPED_SERVERERROR);
       if (e.getMessage().indexOf("Exception") > -1)
       {
         wsInfo.setStatus(j.jobnum, WebserviceInfo.STATE_STOPPED_SERVERERROR);
-- 
1.7.10.2