From 3b01c6d7030e7b96d21a81b21940950ae7c8ff0a Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 15 Dec 2004 17:27:31 +0000
Subject: [PATCH] No need to sened sequence to determine residue colour

---
 src/jalview/schemes/ConservationColourScheme.java |    4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/jalview/schemes/ConservationColourScheme.java b/src/jalview/schemes/ConservationColourScheme.java
index 7acc722..ab5a808 100755
--- a/src/jalview/schemes/ConservationColourScheme.java
+++ b/src/jalview/schemes/ConservationColourScheme.java
@@ -67,7 +67,7 @@ public class ConservationColourScheme extends ResidueColourScheme {
 
       seq.setColor(c);
   }
-   public Color findColour(SequenceI seq, String s, int i, java.util.Vector whatever)
+   public Color findColour(String s, int i, java.util.Vector whatever)
    {
      Color c = null;
      if (colourThreshold > 0 && conserve.getConsSequence() != null)
@@ -105,7 +105,7 @@ public class ConservationColourScheme extends ResidueColourScheme {
    }
 
   public Color findColour(DrawableSequence seq, String s, int j) {
-    return cs.findColour(null, s, -1, null);
+    return cs.findColour( s, -1, null);
   }
   public boolean fullConservation(int j) {
     String tmp = conserve.getConsSequence().getSequence().substring(j,j+1);
-- 
1.7.10.2