From 3b12b9d08114c5acef7f8186f0cf79d235fe3416 Mon Sep 17 00:00:00 2001 From: jprocter Date: Wed, 5 Jan 2011 16:05:15 +0000 Subject: [PATCH] revised shmr service --- src/jalview/ws/rest/RestClient.java | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/src/jalview/ws/rest/RestClient.java b/src/jalview/ws/rest/RestClient.java index 86e606c..df9050b 100644 --- a/src/jalview/ws/rest/RestClient.java +++ b/src/jalview/ws/rest/RestClient.java @@ -281,7 +281,7 @@ public class RestClient extends WSClient implements WSClientI, public static RestClient makeShmmrRestClient() { - String action = "Analyse", description = "Sequence Harmony and Multi-Relief (UNSTABLE!)", name = "SHMR"; + String action = "Analyse", description = "Sequence Harmony and Multi-Relief (UNSTABLE!)", name = "Sequence Harmony"; Hashtable iparams = new Hashtable(); jalview.ws.rest.params.JobConstant toolp; //toolp = new jalview.ws.rest.JobConstant("tool","jalview"); @@ -296,10 +296,13 @@ public class RestClient extends WSClient implements WSClientI, iparams.put(toolp.token, toolp); jalview.ws.rest.params.Alignment aliinput = new jalview.ws.rest.params.Alignment(); - aliinput.token = "ali_file"; - aliinput.writeAsFile=true; - iparams.put("ali_file", aliinput); + aliinput.token = "ali";//_file"; + aliinput.writeAsFile=false;//true; + //aliinput.token = "ali_file"; + //aliinput.writeAsFile=true; + iparams.put(aliinput.token, aliinput); jalview.ws.rest.params.SeqGroupIndexVector sgroups = new jalview.ws.rest.params.SeqGroupIndexVector(); + sgroups.minsize=2; iparams.put("groups", sgroups); sgroups.token = "groups"; sgroups.sep = " "; -- 1.7.10.2