From 3bd49104c09d90f1118ee58b789eaf4d79779e8d Mon Sep 17 00:00:00 2001
From: Mateusz Warowny <mmzwarowny@dundee.ac.uk>
Date: Wed, 23 Mar 2022 18:39:32 +0100
Subject: [PATCH] JAL-3878 Create beans for un/marshalling service parameters

---
 src/jalview/ws2/params/ArgumentBean.java     |   82 ++++++++++++++++++++++++++
 src/jalview/ws2/params/ArgumentBeanList.java |   51 ++++++++++++++++
 2 files changed, 133 insertions(+)
 create mode 100644 src/jalview/ws2/params/ArgumentBean.java
 create mode 100644 src/jalview/ws2/params/ArgumentBeanList.java

diff --git a/src/jalview/ws2/params/ArgumentBean.java b/src/jalview/ws2/params/ArgumentBean.java
new file mode 100644
index 0000000..65b29bb
--- /dev/null
+++ b/src/jalview/ws2/params/ArgumentBean.java
@@ -0,0 +1,82 @@
+package jalview.ws2.params;
+
+import javax.xml.bind.annotation.XmlAttribute;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlRootElement;
+
+import jalview.ws.params.ArgumentI;
+
+/**
+ * A minimal bean implementing {@link ArgumentI} which stores argument
+ * name, label and value. It's mainly used to marshal and unmarshal
+ * parameter values of a preset.
+ * 
+ * @author mmwarowny
+ *
+ */
+@XmlRootElement(name = "parameter")
+class ArgumentBean implements ArgumentI
+{
+  String name;
+
+  String label;
+
+  String value;
+
+  ArgumentBean()
+  {
+    this.name = null;
+    this.label = null;
+    this.value = null;
+  }
+
+  ArgumentBean(ArgumentI copyof)
+  {
+    this.name = copyof.getName();
+    this.label = copyof.getLabel();
+    this.value = copyof.getValue();
+  }
+
+  @XmlAttribute
+  @Override
+  public String getName()
+  {
+    return name;
+  }
+
+  public void setName(String name)
+  {
+    this.name = name;
+  }
+
+  @XmlElement
+  @Override
+  public String getLabel()
+  {
+    return label;
+  }
+
+  public void setLabel(String label)
+  {
+    this.label = label;
+  }
+
+  @XmlElement
+  @Override
+  public String getValue()
+  {
+    return value;
+  }
+
+  @Override
+  public void setValue(String selectedItem)
+  {
+    this.value = selectedItem;
+  }
+
+  @Override
+  public String toString()
+  {
+    return String.format("Parameter(name=%s, value=%s)", name, value);
+  }
+}
\ No newline at end of file
diff --git a/src/jalview/ws2/params/ArgumentBeanList.java b/src/jalview/ws2/params/ArgumentBeanList.java
new file mode 100644
index 0000000..87c15bd
--- /dev/null
+++ b/src/jalview/ws2/params/ArgumentBeanList.java
@@ -0,0 +1,51 @@
+package jalview.ws2.params;
+
+import java.util.ArrayList;
+import java.util.Collections;
+import java.util.List;
+
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlRootElement;
+
+import jalview.ws.params.ArgumentI;
+
+/**
+ * A wrapper of {@link ArgumentBean} list that can be marshaled or unmarshalled.
+ * Used by {@link SimpleParamDatastore} to read and store parameters in a file.
+ * 
+ * @see ArgumentBean
+ * @see SimpleParamDatastore
+ * @author mmwarowny
+ */
+@XmlRootElement(name = "arguments")
+class ArgumentBeanList
+{
+  @XmlElement(name = "argument")
+  public List<ArgumentBean> arguments = Collections.emptyList();
+
+  ArgumentBeanList()
+  {
+  }
+
+  ArgumentBeanList(List<ArgumentBean> arguments)
+  {
+    this.arguments = arguments;
+  }
+
+  static ArgumentBeanList fromList(List<? extends ArgumentI> list)
+  {
+    var args = new ArrayList<ArgumentBean>();
+    for (var item : list)
+      args.add(item instanceof ArgumentBean ? (ArgumentBean) item : new ArgumentBean(item));
+    return new ArgumentBeanList(args);
+  }
+
+  @Override
+  public String toString()
+  {
+    var elements = new String[arguments.size()];
+    for (int i = 0; i < arguments.size(); i++)
+      elements[i] = arguments.toString();
+    return "[" + String.join(", ", elements) + "]";
+  }
+}
\ No newline at end of file
-- 
1.7.10.2