From 3d2b4742a8c0f3c5e5abfc73139351b8aa6ec2dc Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Thu, 25 Sep 2014 19:51:36 +0000 Subject: [PATCH] in progress --- forester/java/src/org/forester/archaeopteryx/ControlPanel.java | 3 ++- forester/java/src/org/forester/archaeopteryx/Options.java | 2 +- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/forester/java/src/org/forester/archaeopteryx/ControlPanel.java b/forester/java/src/org/forester/archaeopteryx/ControlPanel.java index 01adbb8..a885e3e 100644 --- a/forester/java/src/org/forester/archaeopteryx/ControlPanel.java +++ b/forester/java/src/org/forester/archaeopteryx/ControlPanel.java @@ -251,6 +251,7 @@ final class ControlPanel extends JPanel implements ActionListener { displayedPhylogenyMightHaveChanged( false ); } else if ( e.getSource() == _show_whole ) { + displayedPhylogenyMightHaveChanged( true ); showWhole(); } else if ( e.getSource() == _return_to_super_tree ) { @@ -275,7 +276,7 @@ final class ControlPanel extends JPanel implements ActionListener { tp.getPhylogeny().recalculateNumberOfExternalDescendants( true ); tp.resetNodeIdToDistToLeafMap(); tp.setEdited( true ); - displayedPhylogenyMightHaveChanged( false ); + displayedPhylogenyMightHaveChanged( true ); } else if ( e.getSource() == _uncollapse_all ) { uncollapseAll( tp ); diff --git a/forester/java/src/org/forester/archaeopteryx/Options.java b/forester/java/src/org/forester/archaeopteryx/Options.java index 611c354..387bba6 100644 --- a/forester/java/src/org/forester/archaeopteryx/Options.java +++ b/forester/java/src/org/forester/archaeopteryx/Options.java @@ -480,7 +480,7 @@ final public class Options { _show_confidence_stddev = false; _nh_conversion_support_value_style = NH_CONVERSION_SUPPORT_VALUE_STYLE.NONE; _ext_desc_data_to_return = NODE_DATA.UNKNOWN; - _line_up_renderable_node_data = false; + _line_up_renderable_node_data = true; _right_align_domains = false; } -- 1.7.10.2