From 3d3719543b0cb6a65064b169fd9884833e434063 Mon Sep 17 00:00:00 2001 From: gmungoc Date: Mon, 5 Feb 2018 09:32:12 +0000 Subject: [PATCH] JAL-2897 more informative description on synonymous variants Conflicts: test/jalview/analysis/AlignmentUtilsTests.java --- test/jalview/analysis/AlignmentUtilsTests.java | 15 --------------- 1 file changed, 15 deletions(-) diff --git a/test/jalview/analysis/AlignmentUtilsTests.java b/test/jalview/analysis/AlignmentUtilsTests.java index 0559e6b..37b93fd 100644 --- a/test/jalview/analysis/AlignmentUtilsTests.java +++ b/test/jalview/analysis/AlignmentUtilsTests.java @@ -2218,21 +2218,6 @@ public class AlignmentUtilsTests sf.links.get(0)); assertEquals(cosmic, sf.getFeatureGroup()); - // AAA -> AAG synonymous - sf = sfs.get(4); - assertEquals(1, sf.getBegin()); - assertEquals(1, sf.getEnd()); - assertEquals("synonymous_variant", sf.getType()); - assertEquals("AAG", sf.getDescription()); - assertEquals("var4", sf.getValue("ID")); - assertEquals("None", sf.getValue("clinical_significance")); - assertEquals("ID=var4;clinical_significance=None", sf.getAttributes()); - assertEquals(1, sf.links.size()); - assertEquals( - "AAG var4|http://www.ensembl.org/Homo_sapiens/Variation/Summary?v=var4", - sf.links.get(0)); - assertEquals(cosmic, sf.getFeatureGroup()); - // TTT -> TTC synonymous sf = sfs.get(5); assertEquals(2, sf.getBegin()); -- 1.7.10.2