From 3e087813771dee914b78a955bf66ca4803e89797 Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Mon, 5 Mar 2012 10:36:29 +0100
Subject: [PATCH] JAL-942 - sensible name on window

---
 src/jalview/gui/AppVarna.java |    8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/src/jalview/gui/AppVarna.java b/src/jalview/gui/AppVarna.java
index 27c28ad..da6c6e5 100644
--- a/src/jalview/gui/AppVarna.java
+++ b/src/jalview/gui/AppVarna.java
@@ -89,7 +89,7 @@ public class AppVarna extends JInternalFrame implements
     {
       e3.printStackTrace();
     }
-    RNA trim = trimRNA(rna1);
+    RNA trim = trimRNA(rna1, "trimmed "+sname);
     rnaList.add(trim);
     rnaList.add(rna1);
     rnas.put(seq, rna1);
@@ -110,7 +110,7 @@ public class AppVarna extends JInternalFrame implements
     vab = new AppVarnaBinding(rnaList);
     // vab = new AppVarnaBinding(seq,struc);
     // System.out.println("Hallo: "+name);
-    this.name = name;
+    this.name = sname+" trimmed to "+name;
     initVarna();
     ssm = ap.getStructureSelectionManager();
     ssm.addStructureViewerListener(this);
@@ -145,10 +145,10 @@ public class AppVarna extends JInternalFrame implements
     return newStr;
   }
 
-  public RNA trimRNA(RNA rna)
+  public RNA trimRNA(RNA rna, String name)
   {
     ShiftList offset = new ShiftList();
-    RNA rnaTrim = new RNA("trim_" + rna.getName());
+    RNA rnaTrim = new RNA(name);
     try
     {
       rnaTrim.setRNA(rna.getSeq(), replaceOddGaps(rna.getStructDBN()));
-- 
1.7.10.2