From 3e88ca066c0cc12f1f1f4c63e9cd49e19586b2bd Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Tue, 17 Jan 2017 15:54:06 +0000 Subject: [PATCH] JAL-2349 rename ContactMatrixTest to SeqDistanceContactMatrix --- .../{ContactMatrixTest.java => SeqDistanceContactMatrix.java} | 4 ++-- src/jalview/io/AppletFormatAdapter.java | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) rename src/jalview/datamodel/{ContactMatrixTest.java => SeqDistanceContactMatrix.java} (91%) diff --git a/src/jalview/datamodel/ContactMatrixTest.java b/src/jalview/datamodel/SeqDistanceContactMatrix.java similarity index 91% rename from src/jalview/datamodel/ContactMatrixTest.java rename to src/jalview/datamodel/SeqDistanceContactMatrix.java index 24d95d8..ee7de5e 100644 --- a/src/jalview/datamodel/ContactMatrixTest.java +++ b/src/jalview/datamodel/SeqDistanceContactMatrix.java @@ -8,11 +8,11 @@ import java.awt.Color; * @author jprocter * */ -public class ContactMatrixTest implements ContactMatrixI +public class SeqDistanceContactMatrix implements ContactMatrixI { private int width = 0; - public ContactMatrixTest(int width) + public SeqDistanceContactMatrix(int width) { this.width = width; } diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java index 93ff448..4c9324c 100755 --- a/src/jalview/io/AppletFormatAdapter.java +++ b/src/jalview/io/AppletFormatAdapter.java @@ -26,7 +26,7 @@ import jalview.datamodel.Alignment; import jalview.datamodel.AlignmentAnnotation; import jalview.datamodel.AlignmentI; import jalview.datamodel.AlignmentView; -import jalview.datamodel.ContactMatrixTest; +import jalview.datamodel.SeqDistanceContactMatrix; import jalview.datamodel.PDBEntry.Type; import jalview.datamodel.SequenceI; import jalview.ext.jmol.JmolParser; @@ -309,7 +309,7 @@ public class AppletFormatAdapter alignFile.addGroups(al); - al.addContactList(new ContactMatrixTest(al.getWidth())); + al.addContactList(new SeqDistanceContactMatrix(al.getWidth())); return al; } -- 1.7.10.2