From 3ed9d5436295b568be972ad3670867514493d993 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 24 Oct 2017 15:10:09 +0100
Subject: [PATCH] =?utf8?q?JAL-2541=20only=20need=20to=20shift=20features=20f?=
 =?utf8?q?or=20=E2=80=98internal=E2=80=99=20cut?=
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---
 src/jalview/commands/EditCommand.java |    5 +++++
 1 file changed, 5 insertions(+)

diff --git a/src/jalview/commands/EditCommand.java b/src/jalview/commands/EditCommand.java
index 4c2f8e7..a3ad0c2 100644
--- a/src/jalview/commands/EditCommand.java
+++ b/src/jalview/commands/EditCommand.java
@@ -558,6 +558,11 @@ public class EditCommand implements CommandI
           }
           command.oldds[i] = oldds;
 
+          // do we need to edit sequence features for new sequence ?
+          if (oldds != sequence.getDatasetSequence()
+                  || (cutIsInternal
+                          && sequence.getFeatures().hasFeatures()))
+          {
             if (cutPositions != null)
             {
               cutFeatures(command, sequence, cutPositions.getBegin(),
-- 
1.7.10.2