From 3f2fdf01c3bc9d0c506a39bd28b9a682ad42bc50 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 8 Oct 2013 14:33:53 +0100
Subject: [PATCH] fix for JAL-1387

---
 src/jalview/appletgui/APopupMenu.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index c71818e..70804f6 100755
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -166,7 +166,7 @@ public class APopupMenu extends java.awt.PopupMenu implements
       displayNonconserved.setState(sg.getShowNonconserved());
       if (!ap.av.getAlignment().getGroups().contains(sg))
       {
-        groupMenu.remove(unGroupMenuItem);
+        menu1.remove(unGroupMenuItem);
       }
 
     }
-- 
1.7.10.2