From 4264327f75849700f5c0e3a1c21ae21fd7402986 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 14 Nov 2005 11:58:49 +0000
Subject: [PATCH] Dont add sequence group at the moment

---
 src/MCview/PDBCanvas.java |   25 ++++++++++++++++++++-----
 1 file changed, 20 insertions(+), 5 deletions(-)

diff --git a/src/MCview/PDBCanvas.java b/src/MCview/PDBCanvas.java
index 7b6021d..2bc934f 100755
--- a/src/MCview/PDBCanvas.java
+++ b/src/MCview/PDBCanvas.java
@@ -179,6 +179,15 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
           }
        });
 
+      /*
+       SequenceGroup sg = new SequenceGroup("PDB",
+                                            null, true,true,false,
+                                            sequence.findIndex(seqstart-1),
+                                            sequence.findIndex(seqend-1));
+       sg.addSequence(sequence, false);
+       sg.setOutlineColour(Color.black);
+       seqcanvas.getViewport().getAlignment().addGroup(sg);
+       */
 
         findCentre();
         findWidth();
@@ -643,20 +652,26 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
 
     void drawLabels(Graphics g) {
 
-        for (int ii = 0; ii < pdb.chains.size(); ii++) {
+        for (int ii = 0; ii < pdb.chains.size(); ii++)
+        {
             PDBChain chain = (PDBChain) pdb.chains.elementAt(ii);
 
-            if (chain.isVisible) {
+            if (chain.isVisible)
+            {
                 Vector bonds = ((PDBChain) pdb.chains.elementAt(ii)).bonds;
 
-                for (int i = 0; i < bonds.size(); i++) {
+                for (int i = 0; i < bonds.size(); i++)
+                {
                     Bond tmpBond = (Bond) bonds.elementAt(i);
 
-                    if (tmpBond.at1.isSelected) {
+                    if (tmpBond.at1.isSelected)
+                    {
                         labelAtom(g, tmpBond, 1);
                     }
 
-                    if (tmpBond.at2.isSelected) {
+                    if (tmpBond.at2.isSelected)
+                    {
+
                         labelAtom(g, tmpBond, 2);
                     }
                 }
-- 
1.7.10.2