From 453439b6b855fd668efeb5d5da446bb996dc0a83 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Fri, 17 Dec 2010 13:56:04 +0000
Subject: [PATCH] 1.1 compat

---
 src/jalview/datamodel/ColumnSelection.java |   13 ++++++++++---
 1 file changed, 10 insertions(+), 3 deletions(-)

diff --git a/src/jalview/datamodel/ColumnSelection.java b/src/jalview/datamodel/ColumnSelection.java
index 0bcbd5b..589c19b 100644
--- a/src/jalview/datamodel/ColumnSelection.java
+++ b/src/jalview/datamodel/ColumnSelection.java
@@ -1181,9 +1181,16 @@ public class ColumnSelection
                 sq = sq + sb;
                 while ((diff = spos + offset - sq.length() - 1) > 0)
                 {
-                  sq = sq
-                          + ((diff >= sb.length()) ? sb.toString() : sb
-                                  .substring(0, diff));
+                  //sq = sq
+                  //        + ((diff >= sb.length()) ? sb.toString() : sb
+                  //                .substring(0, diff));
+                  if (diff>=sb.length()) {
+                    sq+=sb.toString();
+                  } else {
+                    char[] buf = new char[diff];
+                    sb.getChars(0, diff, buf, 0);
+                    sq+=buf.toString();
+                  }
                 }
               }
               sq += sb.toString();
-- 
1.7.10.2