From 464f98709ffcb68683bff35d7a0e4cdc99fc5daf Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Sun, 23 Nov 2014 16:31:26 +0000 Subject: [PATCH 1/1] JAL-1569 formatting --- src/jalview/io/StockholmFile.java | 18 +++++++++++++----- 1 file changed, 13 insertions(+), 5 deletions(-) diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java index c546930..85f9455 100644 --- a/src/jalview/io/StockholmFile.java +++ b/src/jalview/io/StockholmFile.java @@ -199,7 +199,9 @@ public class StockholmFile extends AlignFile r = new Regex("# STOCKHOLM ([\\d\\.]+)"); if (!r.search(nextLine())) { - throw new IOException(MessageManager.getString("exception.stockholm_invalid_format")); + throw new IOException( + MessageManager + .getString("exception.stockholm_invalid_format")); } else { @@ -417,9 +419,11 @@ public class StockholmFile extends AlignFile if (!x.search(line)) { // logger.error("Could not parse sequence line: " + line); - throw new IOException(MessageManager.formatMessage("exception.couldnt_parse_sequence_line", new String[]{line})); + throw new IOException(MessageManager.formatMessage( + "exception.couldnt_parse_sequence_line", new String[] + { line })); } - String ns = (String) seqs.get(x.stringMatched(1)); + String ns = seqs.get(x.stringMatched(1)); if (ns == null) { ns = ""; @@ -529,7 +533,9 @@ public class StockholmFile extends AlignFile } else { - throw new IOException(MessageManager.formatMessage("exception.error_parsing_line", new String[]{line})); + throw new IOException(MessageManager.formatMessage( + "exception.error_parsing_line", new String[] + { line })); } } else if (annType.equals("GC")) @@ -658,7 +664,9 @@ public class StockholmFile extends AlignFile } else { - throw new IOException(MessageManager.formatMessage("exception.unknown_annotation_detected", new String[]{annType,annContent})); + throw new IOException(MessageManager.formatMessage( + "exception.unknown_annotation_detected", new String[] + { annType, annContent })); } } } -- 1.7.10.2