From 46f46f6acdd31c3cb81e31838e6cf10cf7554e47 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 15 Feb 2006 15:16:16 +0000
Subject: [PATCH] No longer used

---
 src/jalview/datamodel/SuperGroup.java |  177 ---------------------------------
 1 file changed, 177 deletions(-)
 delete mode 100755 src/jalview/datamodel/SuperGroup.java

diff --git a/src/jalview/datamodel/SuperGroup.java b/src/jalview/datamodel/SuperGroup.java
deleted file mode 100755
index 6c0e604..0000000
--- a/src/jalview/datamodel/SuperGroup.java
+++ /dev/null
@@ -1,177 +0,0 @@
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
-package jalview.datamodel;
-
-import jalview.schemes.*;
-
-import java.util.*;
-
-
-/**
- * DOCUMENT ME!
- *
- * @author $author$
- * @version $Revision$
- */
-public class SuperGroup
-{
-    String groupName;
-    boolean displayBoxes;
-    boolean displayText;
-    boolean colourText;
-
-    /** DOCUMENT ME!! */
-    public ColourSchemeI cs;
-    Vector sequenceGroups = new Vector();
-
-    /**
-     * Creates a new SuperGroup object.
-     */
-    public SuperGroup()
-    {
-        groupName = "Super group";
-        this.displayBoxes = true;
-        this.displayText = true;
-        this.colourText = false;
-        cs = null;
-    }
-
-    /**
-     * Creates a new SuperGroup object.
-     *
-     * @param groupName DOCUMENT ME!
-     * @param scheme DOCUMENT ME!
-     * @param displayBoxes DOCUMENT ME!
-     * @param displayText DOCUMENT ME!
-     * @param colourText DOCUMENT ME!
-     */
-    public SuperGroup(String groupName, ColourSchemeI scheme,
-        boolean displayBoxes, boolean displayText, boolean colourText)
-    {
-        this.groupName = groupName;
-        this.displayBoxes = displayBoxes;
-        this.displayText = displayText;
-        this.colourText = colourText;
-        this.cs = scheme;
-    }
-
-    /**
-     * DOCUMENT ME!
-     *
-     * @return DOCUMENT ME!
-     */
-    public String getName()
-    {
-        return groupName;
-    }
-
-    /**
-     * DOCUMENT ME!
-     *
-     * @param name DOCUMENT ME!
-     */
-    public void setName(String name)
-    {
-        groupName = name;
-    }
-
-    /**
-     * DOCUMENT ME!
-     *
-     * @param sg DOCUMENT ME!
-     */
-    public void addGroup(SequenceGroup sg)
-    {
-        if (!sequenceGroups.contains(sg))
-        {
-            sequenceGroups.addElement(sg);
-        }
-    }
-
-    /**
-     * DOCUMENT ME!
-     *
-     * @param sg DOCUMENT ME!
-     */
-    public void addOrRemove(SequenceGroup sg)
-    {
-        if (sequenceGroups.contains(sg))
-        {
-            deleteGroup(sg);
-        }
-        else
-        {
-            addGroup(sg);
-        }
-    }
-
-    /**
-     * DOCUMENT ME!
-     *
-     * @param sg DOCUMENT ME!
-     */
-    public void deleteGroup(SequenceGroup sg)
-    {
-        sequenceGroups.removeElement(sg);
-    }
-
-    /**
-     * DOCUMENT ME!
-     *
-     * @param sg DOCUMENT ME!
-     */
-    public void setSuperGroupProperties(SequenceGroup sg)
-    {
-        cs = sg.cs;
-        colourText = sg.colourText;
-        displayText = sg.displayText;
-        displayBoxes = sg.displayBoxes;
-
-        for (int i = 0; i < sequenceGroups.size(); i++)
-        {
-            SequenceGroup temp = (SequenceGroup) sequenceGroups.elementAt(i);
-            temp.cs = sg.cs;
-            temp.colourText = sg.colourText;
-            temp.displayText = sg.displayText;
-            temp.displayBoxes = sg.displayBoxes;
-        }
-    }
-
-    /**
-     * DOCUMENT ME!
-     *
-     * @return DOCUMENT ME!
-     */
-    public int getSize()
-    {
-        return sequenceGroups.size();
-    }
-
-    /**
-     * DOCUMENT ME!
-     *
-     * @param i DOCUMENT ME!
-     *
-     * @return DOCUMENT ME!
-     */
-    public SequenceGroup getGroupeAt(int i)
-    {
-        return (SequenceGroup) sequenceGroups.elementAt(i);
-    }
-}
-- 
1.7.10.2