From 471cfb5b0f6bb249e478f0c02d80eeea6a834383 Mon Sep 17 00:00:00 2001 From: James Procter Date: Thu, 7 Sep 2023 18:00:54 +0100 Subject: [PATCH] JAL-4090 release notes for JAL-244 JAL-901 JAL-4260 JAL-4189 JAL-2910 --- help/markdown/releases/release-2_11_3_0.md | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/help/markdown/releases/release-2_11_3_0.md b/help/markdown/releases/release-2_11_3_0.md index 087993c..0fa114d 100644 --- a/help/markdown/releases/release-2_11_3_0.md +++ b/help/markdown/releases/release-2_11_3_0.md @@ -22,6 +22,7 @@ channel: "release" - sequence descriptions are updated from database reference sources if not already defined - Visible adjuster marks to grab and adjust annotation panel height and id width +- Adjustable ID margin when alignment is wrapped - Command line options and configurable bitmap export preferences for height, width and scale factor @@ -47,6 +48,8 @@ channel: "release" - New command line argument framework allowing flexible batch processing, figure generation, and import of structures, pae matrices and other sequence associated data - Assume --headless when jalview is run with a command line argument that generates output +- Automatically adjust Left margin on import to avoid cropping of annotation labels & sequence IDs +- Specify alignment title on import via --title argument ### Other improvements @@ -74,6 +77,7 @@ known issue ? 'Reload' for a jalview project results in all wi - Improved file chooser's 'recent files' view and added filter for 'All known alignment files' - Relative files added to recent files list via import from command line are selected when Jalview opened from same location + ## Still in progress (delete on release) - Import and display sequence-associated contact predictions in CASP-RR format @@ -108,7 +112,9 @@ known issue ? 'Reload' for a jalview project results in all wi - Overview window is saved in project file, and state of 'show hidden regions' is preserved. - JvCacheableInputBoxTest flaky on build server - SLF4J produces an error to STDERR at Jalview startup due to missing class -- macOS Dock and KDE taskbar names Jalview icon "java" when running +- HeadlessException in console in headless mode (actually fixed in 2.11.{0,1,2)) + ## New Known defects - Cannot cancel structure view open action once it has been started via the structure chooser dialog -- 1.7.10.2