From 485ceb23bbae52bb2b0fd1def01e1f6822ececcf Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 23 Mar 2005 15:38:14 +0000
Subject: [PATCH] drawableSequence removed

---
 src/MCview/PDBChain.java               |    3 +--
 src/MCview/PDBfile.java                |    4 ++--
 src/jalview/analysis/Conservation.java |    6 +++---
 3 files changed, 6 insertions(+), 7 deletions(-)

diff --git a/src/MCview/PDBChain.java b/src/MCview/PDBChain.java
index 6a72786..15de7c3 100755
--- a/src/MCview/PDBChain.java
+++ b/src/MCview/PDBChain.java
@@ -18,7 +18,6 @@ package MCview;
 
 import jalview.datamodel.*;
 import jalview.schemes.ResidueProperties;
-import jalview.gui.*;
 
 import java.awt.*;
 import java.util.*;
@@ -210,7 +209,7 @@ public class PDBChain {
   }
 
 
-  public void colourBySequence(DrawableSequence seq) {
+  public void colourBySequence(Sequence seq) {
 
 //    for (int i = 0; i < bonds.size(); i++) {
 //      Bond tmp = (Bond)bonds.elementAt(i);
diff --git a/src/MCview/PDBfile.java b/src/MCview/PDBfile.java
index 7e46b2e..1aa5cac 100755
--- a/src/MCview/PDBfile.java
+++ b/src/MCview/PDBfile.java
@@ -1,6 +1,6 @@
 package MCview;
 
-import jalview.gui.*;
+import jalview.datamodel.*;
 import java.io.*;
 import java.net.*;
 import java.util.*;
@@ -117,7 +117,7 @@ public class PDBfile extends jalview.io.FileParse {
     }
   }
 
-  public void colourBySequence(DrawableSequence seq) {
+  public void colourBySequence(Sequence seq) {
 //SMJS TODO
 //    int max = seq.maxchain;
 //    if (seq.maxchain != -1) {
diff --git a/src/jalview/analysis/Conservation.java b/src/jalview/analysis/Conservation.java
index eed6d0a..c5ddd0f 100755
--- a/src/jalview/analysis/Conservation.java
+++ b/src/jalview/analysis/Conservation.java
@@ -32,7 +32,7 @@ public class Conservation {
 
   String consString = "";
 
-  DrawableSequence consSequence;
+  Sequence consSequence;
   Hashtable        propHash;
   int              threshold;
 
@@ -182,10 +182,10 @@ public class Conservation {
       }
     }
 
-    consSequence = new DrawableSequence(name,consString,start,end);
+    consSequence = new Sequence(name,consString,start,end);
   }
 
-  public jalview.gui.DrawableSequence getConsSequence() {
+  public Sequence getConsSequence() {
     return consSequence;
   }
 
-- 
1.7.10.2